Detailed information on CNT30673153


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 7e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30266631Setaria viridisChenopodium quinoa58.1743.4985.83381forward
CNT30712486Setaria viridisGlycine max50.2341.0784.19329forward
CNT30638840Setaria viridisCapsicum annuum56.3443.2184.55369forward
CNT3055164Setaria viridisAmborella trichopoda32.8218.786.51215forward

Expression of CNT30673153

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MTKRPDGLRWKMVFSSRYCSGMTGLMTCSLRSAAISSLVTVSSCWVEMRTVW*

>peptide 2 (40 aa)
YHLLGQYNTNDSKGQIKNHNTEATKHDKRSRPKASSQRAP*

>peptide 3 (74 aa)
MRSTDDKATRWVKVEDGLLVKVLLRDDRLDDMLLEVSGNLIVGDCLVVLGRDEDSMVTSWGVLVSDPTRPQRTPS

>peptide 4 (38 aa)
MIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

Sequence

>CNT30673153
GTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCAAACATGATAAGCGCAGCAGACCAAAA
GCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGT
AGGCAGCTGTCTTGAGGATCTCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGCACACCGATGGCATAGGAGAC
CTGGACGATGGCGCGGCGAGCAAGGCCATTAGCGACAATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGTCAACCTTGGTGTCAATGATG
ATCTTCCGGCCAGTGAGACCAGCATCACCATGAGGTCCACCGATGACAAAGCGACCAGATGGGTTAAGGTGGAAGATGGTCTTCTCGTCAAGGTACTGCT
CAGGGATGACAGGCTTGATGACATGCTCCTTGAGGTCAGCGGCAATCTCATCGTTGGTGACTGTCTCGTCGTGCTGGGTAGAGATGAGGACAGTATGGTA
ACAAGTTGGGGAGTGCTCGTCTCAGATCCGACCCGGCCGCAGCGCACGCCGAGCT