Detailed information on CNT30672929


BLAST search results

BLAST vs Swiss-Prot:
sp|P22953|HS701_ARATH, E-value = 2e-40

BLAST vs NONCODE:
NONVVIT003131, E-value = 3e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616016Setaria viridisSesamum indicum49.6749.585.23149forward
CNT30588413Setaria viridisMusa acuminata48.3364.1685.52145forward
CNT3067065Setaria viridisLeersia perrieri4632.4788.41138forward
CNT30361391Setaria viridisSorghum bicolor42.6715.2989.84128forward
CNT30369286Setaria viridisOryza glumipatula4723.6287.94141forward

Expression of CNT30672929

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVILFFWPVVLSSAETFRMPLASMSKQTVVVAGPSPLTL

>peptide 2 (59 aa)
HPTDATNQPTDRPTITRRSSPESSWTPPSSCAPRPLTCTSQRPAPSSRSPPWTDGPYRW*

>peptide 3 (36 aa)
TIQQTLLTNRPTDRPSRGVVLQRVLGLHLLLVLLVL*

Sequence

>CNT30672929
ACCATCCAACAGACGCTACTAACCAACCGACCGACCGACCGACCATCACGAGGCGTAGTTCTCCAGAGAGTTCTTGGACTCCACCTTCTTCTTGTGCTCC
TCGTCCTCTGACTTGTACTTCTCAGCGTCCTGCACCATCTTCTCGATCTCCTCCTTGGACAGACGGCCCTTATCGTTGGTGATGGTGATCTTGTTCTTCT
GGCCCGTGGTCTTGTCCTCAGCGGAGACGTTCAGGATGCCGTTGGCGTCGATGTCGAAGCAGACAGTTGTTGTCGCGGGTCCTAGTCCTCTCACCCTCGT