Detailed information on CNT30672017


BLAST search results

BLAST vs Swiss-Prot:
sp|Q67ZB3|FRL3_ARATH, E-value = 2e-24

BLAST vs NONCODE:
NONORUT007260, E-value = 3e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696268Setaria viridisOryza sativa57.4230.985.96178forward
CNT30547891Setaria viridisIpomoea triloba36.4525.0683.19113forward
CNT30554950Setaria viridisOryza glaberrima57.4226.8585.96178forward
CNT30605247Setaria viridisGossypium raimondii22.919.0987.3271forward
CNT30329949Setaria viridisDioscorea rotundata46.1320.0882.52143forward
CNT30103417Setaria viridisOryza rufipogon53.2321.6586.67165forward

Expression of CNT30672017

Peptides detected in this lncRNA

>peptide 1 (44 aa)
LNWVTISIIRCVGRLDRVRVGGKPLWGCRIKALVSKAGSTGCKG*

Sequence

>CNT30672017
ACTGAACTGGGTAACCATTAGCATAATAAGGTGTGTGGGCAGGTTGGATCGTGTAAGGGTAGGAGGGAAGCCTCTCTGGGGTTGCAGGATAAAAGCTCTT
GTCAGCAAAGCCGGTAGCACGGGGTGCAAAGGCTGATCCATTTGCACGAGGCCTCTTGGACTGTGGCTTTGCTGCTTCAACAGCCCTCCTCTTGTCTGCC
TTTGCTTTCTCTAGCTGCAAAACCCTTTTCTGAAGTGGATCCACAGGGTATTGCTCCTCGAGTTTGTGCTCCTCAATGCACTTAATGACAGCTTTCAGTG
CAGATAACTC