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Detailed information on CNT30103417


BLAST search results

BLAST vs Swiss-Prot:
sp|Q67ZB3|FRL3_ARATH, E-value = 3e-19

BLAST vs NONCODE:
NONORUT007260, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696268Oryza rufipogonOryza sativa72.4495.8399.82552forward
CNT30672017Oryza rufipogonSetaria viridis21.6553.2386.67165forward
CNT30554950Oryza rufipogonOryza glaberrima82.8195.1799.84631forward

Expression of CNT30103417

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MVPGTEPDSHYHNMLCGQVTCHRELSLSLLGDDGPQHHIHTASRKGRNASVAQRPGRSFCQKS*

>peptide 2 (39 aa)
MMGLSTIYILPLVRVGMPLWRSGLVEAFVRKASNMWRIY*

Sequence

>CNT30103417
ATCAAATAAAAAGATTTGGGACAACAATTTTGTTTCAAGTGCAACAGAAAGGAATTAGTGGATAATTCCACCAAGCAGAGCACATAATTCCAGCATTCTG
CAGTACTGGGACTATCTCAACTCCAACATATATATGCCATAGGCTATATATTAAACAAAAGCAAATTATTTTAACTAGACATTAGAAGTAAATTATGTCA
TAAGTCGTGAGGGAAATTAAAAGATTTTCACACTGGCCACTCAGCACACACAAGAGTGGTCGAACTAATTTAAGCTAGGCAGTCTAGCTAGTGGATTGAT
ACAACTACAGCACATAGTAGCAGCAGGTTAAAAGCTAGTACATAGTTAGGAAAGAGCACATTACGCTCTCTCCATCAGTGGATATATGGTACCTGGTACT
GAACCTGATAGCCATTACCATAATATGTTGTGTGGGCAGGTGACATGCCATAGGGAGCTGAGCTTATCATTGTTGGGTGATGATGGGCCTCAGCACCATA
TACATACTGCCTCTCGTAAGGGTAGGAATGCCTCTGTGGCGCAGCGGCCTGGTAGAAGCTTTTGTCAGAAAAGCTAGTAATATGTGGCGCATATACTGAT
CCGTTGGCACGAGGCCTCTTAGACTGTGGCTTTCCAGCTTCAACAGCCCTCCTCTTGTCTGCCTTGGCTTTCTCTAGCTGGATGACTCTTCTCTGAAGTG
GGTCGATAGGATATTTCTCATCAAGTTTGTGCTCCTCAATACATTTGATAACAGCTTTCAAG