Detailed information on CNT30547891


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672017Ipomoea trilobaSetaria viridis25.0636.4583.19113forward
CNT30534130Ipomoea trilobaEucalyptus grandis33.9225.3783.01153forward
CNT3087232Ipomoea trilobaVigna radiata35.9221.4683.33162forward
CNT30605247Ipomoea trilobaGossypium raimondii36.1443.8279.75163forward
CNT30329949Ipomoea trilobaDioscorea rotundata32.3720.5180.82146forward
CNT30176227Ipomoea trilobaVigna angularis35.9230.2882.72162forward

Expression of CNT30547891

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MHLITAFSAFNFLQSFSMPSSQGSNVKTLITHACNGFMN*

>peptide 2 (90 aa)
WVPVSGSSVEVLVSGNVSNSGTMANTISTGSFGLRFWNFSCPFLVCLGFLHLENSFLEGIHRILLLKIMILDAFNHSLQCIQFFTKLQHA*

Sequence

>CNT30547891
GGTGGGTACCTGTCAGTGGTTCTAGCGTAGAAGTTCTTGTCAGTGGCAACGTTAGCAACTCGGGAACCATGGCAAACACCATTAGCACGGGGTCTTTTGG
GTTGAGGTTTTGGAACTTCAGTTGCCCTTTTCTTGTCTGCCTTGGCTTTCTCCATCTGGAGAACTCGTTTTTGGAGGGGATCCACAGGATATTGCTCCTC
AAGATTATGATCCTCGATGCATTTAATCACAGCCTTCAGTGCATTCAATTTTTTACAAAGCTTCAGCATGCCTAGCAGCCAAGGCTCCAATGTGAAAACC
CTGATAACTCATGCCTGCAATGGCTTTATGAACTAGTCAGTGATTCTGTCAATTCAACAATTAGCCATTTTACCAGAGTCAGAGAACTAACTCATCATCA
TACAAATAGAGTTCTCAGACTCCCACACAGCCACACTTTGGCCCCCTTCCC