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Detailed information on CNT30329949


BLAST search results

BLAST vs Swiss-Prot:
sp|Q67ZB3|FRL3_ARATH, E-value = 4e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696268Dioscorea rotundataOryza sativa18.422.7484.73131forward
CNT30672017Dioscorea rotundataSetaria viridis20.0846.1382.52143forward
CNT30547891Dioscorea rotundataIpomoea triloba20.5132.3780.82146forward
CNT30554950Dioscorea rotundataOryza glaberrima20.0821.5784.62143forward

Expression of CNT30329949

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MIRFCSGSTGYCSSSLWSSMHLITTFRAVNSRSFSSF*

>peptide 2 (44 aa)
MLLDSNCLTTMIQEPTHYHDPNNLENKSQLEHNKFKSSNNLGEF*

Sequence

>CNT30329949
CAGATACAGATGGGTTAAAAAGCTACTAGTTAGGAAAGATCACAACCACCTGTGTTTTCAACGTTCTAGTGTATGAAAGAGGTTTGGTACTGAACCTGAT
AGCCATTCCCATAGTAAGTGCTGTGAGTAGGGGAGATGGTGTAGGACACTGATCCCATAAGAGTACGGGTATCGATCAGGTGGACGGTAGAAGCTCTTCT
CTGGGATGGACGTCACACGGGGCGCATAGGTGGTGCCATTTGCACGGGGCCTTTTGGATTGAGGTTTGGCGGTTTCAGCGGCCCGTCTCTTGTCTGCCTT
GGCTTTCTCCAGCTGCATGATTCGTTTCTGCAGTGGGTCGACAGGGTATTGTTCCTCAAGTTTGTGGTCCTCAATGCATTTGATTACAACTTTTAGAGCA
GTCAACTCGCGCTCATTCAGTTCATTCTGAAACAATAAGGAGAGTTAATCTGATGCTCTTAGACAGTAACTGTCTGACTACAATGATACAAGAGCCAACT
CACTACCATGATCCAAACAACTTAGAGAACAAAAGTCAATTAGAACACAACAAATTTAAATCCTCAAACAATTTGGGAGAATTTTAACCAGAAAAAGAAA
TCAAATCATATAATAGACTGGTTAGTTTCTAGATTGAATACATATAAAAGATCAAATTCATCAAGTCAGCTGTCTTAATACAGATAAAACATAGGTTAAC
ATGGTAACTGAC