CANTATAdb - search

Detailed information on CNT30554950

BLAST search results

BLAST vs Swiss-Prot:
sp|Q67ZB3|FRL3_ARATH, E-value = 5e-24

BLAST vs NONCODE:
NONORUT007260, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696268	Oryza glaberrima	Oryza sativa	86.88	100	100	576	forward
CNT30672017	Oryza glaberrima	Setaria viridis	26.85	57.42	85.96	178	forward
CNT30329949	Oryza glaberrima	Dioscorea rotundata	21.57	20.08	84.62	143	forward
CNT30103417	Oryza glaberrima	Oryza rufipogon	95.17	82.81	99.84	631	forward

Expression of CNT30554950

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MVPGTEPDSHYHNMLCGQVTCHRELSLSLLGDDGPQHHIHTASRKGRNASVAQRPGRSFCQKS*

>peptide 2 (39 aa)
MMGLSTIYILPLVRVGMPLWRSGLVEAFVRKASNMWRIY*

Sequence

>CNT30554950
ATATGCCATAGGCTATATATTAAACAAAAGCAAATTATTTTAACTAGACATTAGAAGTAAATTATGTCATAAGTCGTGAGGGAAATTAACAGATTTTCAC
ACTGGCCACTCAGCACACACAAGAGTGGTCGAACTAATTTAAGCTAGGCAGTCTAGCTAGTGGATTGATACAACTACAGCACATAGTAGCAGCAGGTTAA
AAGCTAGTACATAGTTAGGAAAGAGCACATTACGCTCTCTCCATCAGTGGATATATGGTACCTGGTACTGAACCTGATAGCCATTACCATAATATGTTGT
GTGGGCAGGTGACATGCCATAGGGAGCTGAGCTTATCATTGTTGGGTGATGATGGGCCTCAGCACCATATACATACTGCCTCTCGTAAGGGTAGGAATGC
CTCTGTGGCGCAGCGGCCTGGTAGAAGCTTTTGTCAGAAAAGCTAGTAATATGTGGCGCATATACTGATCCGTTGGCACGAGGCCTCTTAGACTGTGGCT
TTCCAGCTTCAACAGCCCTCCTCTTGTCTGCCTTGGCTTTCTCTAGCTGGATGACTCTTCTCTGAAGTGGGTCGATAGGATATTTCTCATCAAGTTTGTG
CTCCTCAATACATTTGATAACAGCTTTCAAGGCAGACAACTCGCGTTCATTAATTTCATTCTG