Detailed information on CNT3067135


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672573Leersia perrieriSetaria viridis18.9520.0591.9587forward
CNT30721910Leersia perrieriTriticum spelta18.7428.8686.0586forward
CNT30369801Leersia perrieriOryza glumipatula51.4255.6685.59236reverse complement
CNT30148504Leersia perrieriBrachypodium distachyon17.6531.5290.1281forward
CNT30116376Leersia perrieriOryza nivara59.2650.0983.09272forward

Expression of CNT3067135

Peptides detected in this lncRNA

>peptide 1 (37 aa)
TTHPIHTFLKITQQNYLKTILNELLLLTGFIKSKSKE*

>peptide 2 (63 aa)
MQKVTWPSTKLKGLTARYLTSRYRNQHFNEAHFFLAAALVTLAPVGSFFSTFLMTPTATVXIKL

Sequence

>CNT3067135
CCACGACCCATCCTATTCATACATTTCTAAAAATTACTCAACAAAATTATTTGAAAACAATTTTAAATGAATTACTACTACTAACAGGTTTCATTAAAAG
CAAAAGCAAAGAATAGCATATGCAAAGATAGGAATTAACAATGTAAATATTCCACAATAGCCGAAGGAATCAGTCTCAGAGCATCCAAGTTTTACCAGAA
CAGAAATAAAAGGAGAGTTTTAAGTGACTGACATAGTGCACACTGCGAGCAGATATTAACGGACCATGCAAAAAGTTACATGGCCGTCGACAAAACTTAA
AGGGTTAACAGCTAGATATCTCACGAGCAGATACAGAAACCAACACTTCAACGAGGCTCATTTCTTCTTGGCAGCAGCCTTGGTCACCTTGGCGCCGGTC
GGGTCCTTCTTCTCAACATTCTTGATGACTCCGACAGCCACCGTTNAAATCAAATTAGT