Detailed information on CNT30721910


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3067135Triticum speltaLeersia perrieri28.8618.7486.0586forward
CNT30369801Triticum speltaOryza glumipatula31.2121.9389.2593reverse complement
CNT30483066Triticum speltaChara braunii21.8123.386.1565forward
CNT3053086Triticum speltaAmborella trichopoda26.1712.384.6278forward

Expression of CNT30721910

SRR9114152: 30.61 RPKM

Peptides detected in this lncRNA

>peptide 1 (33 aa)
AQEFSRSRNRNTVIKRQTGSLLARDKSLQQQKQ*

>peptide 2 (65 aa)
MTMNKNLLLDRCLFLLDGSLGNLGAGGVLLLHALDDTNSNRLSHVTHSEAAKRRKEPRGGGGGDGG

>peptide 3 (49 aa)
MAALVTLAPVGSFFSTPLMTPTATVCLMSRTAKRPRGGRNREEAAAGMGG

Sequence

>CNT30721910
GCACAGGAGTTTAGCCGAAGCAGGAATAGAAATACAGTAATTAAACGACAGACAGGATCATTGCTCGCCCGGGATAAGAGTCTGCAGCAACAAAAGCAAT
GACCATGAACAAAAACCTTCTGCTAGATAGATGCCTATTTCTTCTTGATGGCAGCCTTGGTAACCTTGGCGCCGGTGGGGTCCTTCTTCTCCACGCCCTT
GATGACACCAACAGCAACCGTTTGTCTCATGTCACGCACAGCGAAGCGGCCAAGAGGAGGAAGGAACCGAGAGGAGGCGGCGGCGGGGATGGGGGGAC