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Detailed information on CNT30668524


BLAST search results

BLAST vs Swiss-Prot:
sp|P07369|CB2G_SOLLC, E-value = 3e-144

BLAST vs NONCODE:
NONBNAT007398, E-value = 8e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30443381Triticum dicoccoidesAegilops tauschii80.274.4897.09721forward
CNT30455809Triticum dicoccoidesSaccharum spontaneum63.452.3489.3570forward
CNT30149090Triticum dicoccoidesBrachypodium distachyon57.0652.5688.5513forward
CNT30575045Triticum dicoccoidesOryza barthii66.0762.9290.07594forward

Expression of CNT30668524

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWITSSSRFLAKVSGSAERPAVSHP*

>peptide 2 (43 aa)
MACTKYPNMENIARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 3 (29 aa)
PLVFIWKMKTMHFSYRHFMFQMGAICKHL*

>peptide 4 (69 aa)
MCLLAGHKVGGEGPRVVVDGVGEVVSEVLKRTLTGDDGLHKVSKHGEHCKAAVLDLLHLELGKRLWIVS*

Sequence

>CNT30668524
GTCCACTCGTATTCATATGGAAAATGAAAACCATGCATTTCTCATATAGACATTTCATGTTCCAGATGGGCGCTATTTGTAAACATCTTTGATAGTGTAC
AACATCAACGATCAGATATTAATCATACATCCAGAGCACACATATACTCCTGAGAAGTCGATTTTCATGTGTTTACTTGCCGGGCACAAAGTTGGTGGCG
AAGGCCCACGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCAGCGAGGTTCTCAAGCGGACCCTTACCGGTGACGATGGCCTGCACAAAGTATCCAAACA
TGGAGAACATTGCAAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCAAACGCCTCTGGATCGTCAGCTAGGCCAAGGGGGTCGAAGCTGCCACC
GGGGTAGAGTGGGTCGACGATCTCTCCGAGCGGGCCACCAGCAACGCGGTACCCCTCGACAGCGCCCATGAGCACGACCTGGCAAGCCCAGATGGCAAGG
ATGCTCTGAGCGTGGACCAAGCTAGGGTTACCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACT
TGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATCACCTCGAGCTCGCGGTTCTTGGCGAA
GGTCTCCGGGTCGGCGGAGAGGCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGCTGAGCGCGTACGAGGCTCCGGCGAGCTTGATCGCGGGG
GAGGAGAGCGCCATTGTGGTGGAGGCCGCCATTGCTGCCGGATGGAACAGAGCAAGCTGCTGATGTGCGGCTGCCGCTGCTACTGATGGCTGCGTGAGG