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Detailed information on CNT30455809

BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 6e-166

BLAST vs NONCODE:
NONBNAT007398, E-value = 3e-59

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695874	Saccharum spontaneum	Oryza sativa	64.65	65.98	87.64	704	forward
CNT30521860	Saccharum spontaneum	Setaria italica	52.53	51.03	87.59	572	forward
CNT30641326	Saccharum spontaneum	Nymphaea colorata	46.83	45.66	87.06	510	forward
CNT30534338	Saccharum spontaneum	Eucalyptus grandis	52.62	50.84	85.51	573	forward
CNT30188246	Saccharum spontaneum	Secale cereale	57.39	59.02	89.6	625	forward
CNT30300930	Saccharum spontaneum	Triticum aestivum	52.34	56.83	88.42	570	forward
CNT30224540	Saccharum spontaneum	Hordeum vulgare	51.06	51.15	86.15	556	forward
CNT30393321	Saccharum spontaneum	Triticum turgidum	52.34	52.25	88.42	570	forward
CNT30443381	Saccharum spontaneum	Aegilops tauschii	49.95	56.2	89.71	544	forward
CNT30241722	Saccharum spontaneum	Avena sativa	62.9	65.87	87.45	685	forward
CNT30668524	Saccharum spontaneum	Triticum dicoccoides	52.34	63.4	89.3	570	forward
CNT30141287	Saccharum spontaneum	Lolium perenne	52.62	56.34	87.96	573	forward
CNT30345522	Saccharum spontaneum	Eragrostis tef	49.59	54.38	93.52	540	forward
CNT30149090	Saccharum spontaneum	Brachypodium distachyon	47.11	52.56	87.91	513	forward
CNT30103422	Saccharum spontaneum	Oryza rufipogon	64.65	54.28	89.77	704	forward
CNT30575045	Saccharum spontaneum	Oryza barthii	64.74	74.68	90.64	705	forward
CNT30582523	Saccharum spontaneum	Echinochloa crusgalli	53.54	56.27	90.74	583	forward
CNT30604592	Saccharum spontaneum	Oryza punctata	52.62	57.47	92.84	573	forward

Expression of CNT30455809

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MVMRPSPKTSLVLVAGLPTNAREVRAMVAAAMSIRSQLLLSDA*

>peptide 2 (29 aa)
MAQRQWITSSSRFLAKVSGSADSPAVSQP*

>peptide 3 (87 aa)
MACTKKPNMENMARRPFLISFTFSSANASGSSASPSGSKLPPGYSGSTTSPSGPPAIRYPSTAPMSTTWHAQMARMLCAWIRLGLPR*

>peptide 4 (56 aa)
MHTNTLLVQSLTQAPFTNTCTPCSTYEYVCLRYTHASMPSLTCRGRSWWRRPRRCC*

Sequence

>CNT30455809
GGACGTGCTCACTGAACTCTGCAGCACTTCATCACAAATTCACAACTCCGACTTGATCGAATGATCGTCAGAACAATCATGTACAGTATGCATAAATACA
GACATACAATTTACAGCATATTTTATTAATCAGGTCCAGACCATGCATACAAATACACTACTGGTACAATCTCTGACCCAAGCTCCCTTCACAAATACTT
GTACACCCTGCAGTACATACGAATACGTATGTCTACGGTACACGCACGCAAGCATGCCCTCACTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAG
GCGTTGTTGTTGACAGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGACCCTTGCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACA
TGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTCAGCTCGGCGAACGCCTCCGGGTCGTCGGCGAGCCCGAGTGGGTCGAAGCTGCCGCCAGGGTACAG
CGGGTCGACCACCTCCCCGAGCGGGCCACCGGCGATACGGTACCCCTCGACGGCGCCCATGAGCACCACCTGGCACGCCCAGATGGCCAGGATGCTCTGC
GCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCAAGCCCGCCCTCGCTGAAGATCTGTGACCCGGCCTTGAACCACACGGCCTCGCCAAACTTGACGCCGT
TGCGGGCGAGGAGCTCCGGGAACACGCACCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGG
GTCCGCGGACAGCCCAGCGGTGTCCCAGCCGTAGTAGCTTGGGGGCTCGCCGGAGAACGGACCCAGGTACAGGACGCGGTCGGCCCCGTACCAGGGGCTG
CCGGACGCCGCTGGCTTGGGCTTGGCAGCAGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGACGTCCCTGGTGCTGGTCGCCGGCTTGCCGACGAACG
CGCGGGAGGTGAGAGCCATGGTGGCGGCGGCCATGTCGATCAGATCACAGCTTCTTCTGTCTGATGCTTAGCTCTGTGTTGTGTATGCG