CANTATAdb - search

Detailed information on CNT30652074

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-158

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-140

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30512802	Rosa chinensis	Juglans regia	84.37	79.54	84.05	583	forward
CNT30379431	Rosa chinensis	Manihot esculenta	98.7	71.71	84.46	682	forward
CNT30605737	Rosa chinensis	Gossypium raimondii	94.36	85.56	83.13	652	forward
CNT30120618	Rosa chinensis	Citrus clementina	90.01	67.32	82.8	622	forward

Expression of CNT30652074

Peptides detected in this lncRNA

>peptide 1 (37 aa)
SEFRNHRGGGGQGEGWTPSGCYSQQGSSHPQAAFQQI*

>peptide 2 (61 aa)
IQNSETTAEAEDKVKGGLLLDVIVSKGPPILKLLSSKYEPLLIRRNALLVLNLGFYIVNRI*

Sequence

>CNT30652074
ATTCAGAATTCAGAAACCACCGCGGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTCCCATCCTCAAGCTGC
TTTCCAGCAAATATGAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGTTTTTACATTGTCAATCGTATCTGAACTCTCTACCTCCA
AAGTAATGGTCTTCCCAGTCAAAGTTTTAACAAAGATCTGCATACCACCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTCTGAATATTATAGTC
GGCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAATCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCCTGAATTTTAGCTTTCACATTA
TCAATCGTGTCAGAGCTTTCCACTTCCAGAGTGATGGTTTTGCCGGTGAGGGTCTTAACAAAGATTTGCATGCCACCACGGAGACGCAACACCAAGTGAA
GAGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAATATAAGTCTCTGCTGGTCTGGTGGGATACCCTC
TTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCGGAACTCTCAACCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTAACAAAG