Detailed information on CNT30605737


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-177

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-136

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406246Gossypium raimondiiBeta vulgaris86.2297.9183.41657forward
CNT30629221Gossypium raimondiiVigna unguiculata96.7257.4983.58737forward
CNT30709517Gossypium raimondiiGlycine max97.980.383.78746forward
CNT30652074Gossypium raimondiiRosa chinensis85.5694.3683.13652forward
CNT30642514Gossypium raimondiiCannabis sativa97.967.4582.84746forward
CNT3028051Gossypium raimondiiTheobroma cacao99.4862.1885.36758forward
CNT3022146Gossypium raimondiiPopulus trichocarpa86.2286.1184.63657forward

Expression of CNT30605737

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSLCWSGGIPSLSWIFAFTLSMVSELSTSKVMVFPVRVFTKICIPPRRRRTKWRVDSFWIL*

>peptide 2 (88 aa)
MESRLLLDIIIGKSSSIFKLFSSKNQSLLVWWDSFFVLNLGFHIINGIRTLDLQGNCLSSESLDKDLHAATKSKNQVKGGFFLNVVVG*

>peptide 3 (31 aa)
MVSELSTSKVIVFPVRVLTKICMPPRSRRTK*

>peptide 4 (35 aa)
LTLSMVSELSTSRVIVFPVRVLTKICIPPRSRNTK*

Sequence

>CNT30605737
CTTAACATTGTCAATGGTGTCTGAACTTTCAACCTCTAGAGTGATAGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCATCCCACCACGCAGCCGCAAC
ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCGGCCAATGTCCTACCATCTTCGAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGGG
GGATACCCTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTATCGGAACTTTCAACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTTACAAA
GATCTGCATACCACCCCGAAGGCGGAGAACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCAAGTTGTTTTCCA
GCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTGAATCTTGGCTTTCACATTATCAATGGTATCCGAACTCTCGACCTCCAAGGTAA
TTGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCATGCCGCCACGAAGTCGAAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCTAG
CGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAATATAAGCCTCTGCTGATCCGGTGGGATCCCTTCCTTATCTTGGATCTTAGCCTTCACATTATCAATG
GTGTCTGAACTCTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAAGATTTG