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Detailed information on CNT30120618


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-155

BLAST vs NONCODE:
NONMTRT002043, E-value = 6e-106

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3061830Citrus clementinaArabidopsis lyrata70.6746.4884.07653forward
CNT30652074Citrus clementinaRosa chinensis67.3290.0182.8622forward
CNT30572860Citrus clementinaVitis vinifera63.5363.684.33587forward

Expression of CNT30120618

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVSELSTSRVIVLPVRVFTKICISNRAFSCERRKN*

>peptide 2 (48 aa)
MKGRLLLDVIIRKSPSILKLFASEDQTLLIRWNSFLVLDFCLDIVNCV*

Sequence

>CNT30120618
TAAACTAATTTTTATTCATTACCACATAAAACTTGATGTGACAAAAAGACTGAAACAGAAGCAAGACTAACAAATGAAAAATAAATATTACTGCTACAGC
AGAGCAGAACAGACACGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCAGCTAAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAA
AGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCACCTCCAGAGTAATAGT
CTTCCCAGTCAAGGTCTTGACAAATATCTGCATACCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGAGTC
CTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTGTCTTGGATTTTTGCCTTGACATTGTCAATTGTGT
CTGAGCTCTCAACTTCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCATGCCTCCCCTGAGACGAAGAACAAGGTGGAGAGTTGACTC
TTTCTGAATGTTGTAATCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGA
ATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATAGTTTTGCCAGTCAGGGTTTTCACGAAGATCTGCATATCGAACAGAG
CTTTTTCTTGCGAACGAAGGAAGAATTGATAATTGTTGCGATCAAGATGATGAAATGATGAGTGAAGCGCTAGAGGTTCGTGCTTGGTTATATAGCAAAG
CTAACCGACTCGTTGAACGGTTCA