CANTATAdb - search

Detailed information on CNT30623675

BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 5e-39

BLAST vs NONCODE:
NONCQUT001608, E-value = 2e-08

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30514845	Daucus carota	Juglans regia	11.68	20.83	82.46	211	forward
CNT30372132	Daucus carota	Arabidopsis thaliana	11.73	32.82	83.02	212	forward
CNT3091744	Daucus carota	Solanum tuberosum	11.73	20.66	80.66	212	forward
CNT30479552	Daucus carota	Arabidopsis halleri	11.84	37.28	82.24	214	forward
CNT30355778	Daucus carota	Lactuca sativa	11.57	26.59	82.3	209	forward
CNT30335392	Daucus carota	Cynara cardunculus	11.73	26.01	83.49	212	forward

Expression of CNT30623675

Peptides detected in this lncRNA

>peptide 1 (46 aa)
RENKQLDIYNHQQSLHNNPSYFKFPVLEIKCMTQIFRGAGKTSRYK*

>peptide 2 (44 aa)
MLTLKLPRTTLSDLKLCYFESNNSLRNVLPCYTGSSLAHNISEY*

Sequence

>CNT30623675
GCAGGGAAAACAAACAACTAGATATATATAATCACCAACAATCGCTACATAATAATCCTTCATATTTCAAATTTCCTGTGCTGGAGATAAAATGTATGAC
ACAAATATTTAGAGGTGCAGGAAAAACAAGTAGATATAAATAATCACCAACAATCGCTACATATAATCCTCGTAGTTAAAATTTCCTTGTGTTGGAGATA
TTGTGGGTGTTATTGAGAAACATAAAACTGAAAGGAATGAAATGAAATTGCAAGAGGTTTATATATGAGCCGAACAAGATAGATAAATATATGAAATCAG
CAGATTGATCAGCATTCAGGCTGGTGAGCAATGAAACTGATGCACTGGACTTGGCGAACGTTGTCGAATCCGATGATACGGACGTAGGCCTGGGGGTACT
CCTTGACGCACTCATCAAGCTCCTTCAACACCTGCGATGAGTCGGTGCACCCGAACATGGGAAGCTTCCACATAACCCAGTATCGTCCGTCATAGTATCC
GGGGGATTTGTTGTGCTCACGGTACACGAAACCGTGCTACATTTTGGTTTAACACACAATTGTCATCAGCAATGTCAAGAAACATGTAACAGAGAACATG
AAAAATGTGTAGGAAGAAAGTGGTTACCTCCAACTCGAATTCCAGACAAGGAACCCATCCGGAACGGAGAAGGTAGTCGACCTCCTTTGCCAATTGTTCG
GTGGTGAGAGGAGGAAGGTACGAGAGTGTCTCGAACTTCTTCATGTTAATTGGTGGCCATACCTGCGCTTGCACCATTCACATATGTTAGCTAACTAATT
TCTTATTCACTCTCACACCATGGTGTGTTCTCAGTGATATACTTTGTGAATGTCATATTTACTCGATTAGAAACCGACAGATTGTAGTATATTTTTTGAC
AAAAAGTGTTGGATTGCAAAATTTGAAGAACGTGATCATGTCTTTAAAAGAATATACATTTCAGAGTCACTGTTTAATGAGACTAAGAGAGGGGTTACTG
AGAGCAAGCTAAGGTGAAAATCATACAAAAAACTTGGACATGATTAGGTTCTCACACATCTCTATTTTGAATTAAAATCTACTTCACTTGAGGGGCGACA
TGATTAGGCTTTCACACATTGACACACACATGTTTTCTGCGAATCTTGGACTCTCAAACTCCTGTTACTATGGTAAAATATAGAAGTTATCCCCCAGGAT
TGCCAGGGAGTGACATTTCTCTTGAGCTAAAGTATCTAATTGTTTGACTTGACAACAAAATTTCTCAGATCAGATCGGGAGGAAAATACAAGCAAAACCA
TCTTTTATTTGAAGTGTTGACATAATATTTGTAAATTATTTACATATTCAAGGAAAATTCCAAAGTTATGCTCACTCTAAAGTTACCTAGGACTACTTTA
TCTGACTTAAAATTGTGCTACTTTGAAAGCAATAACTCACTAAGAAATGTTCTGCCATGTTATACTGGTTCCTCATTAGCACATAATATATCTGAGTATT
AAGTAGTATAGATATATACCTTCATGCATTGAACTCTTCCTCCGTTGCTGGTAATAGAGGTAATGTCATTCTCGAGCTTTCGGGTGACGGGGAATGATGC
GATGGACTTGAGGCCGGTGAAAGGCGCGACCATGCTAGCCTGAGCAGGGGAGGCACGGGTGACCGGTGCTACTGATGATATCATTGAAGAAGCCATGACT
ACGAATACTCTCTTCTTGTTCTTCTACTAATATATAGGCATTTCATCACTATCGTTTAACTTGCTGATCCAATGGTTCCAAATTCACCTCCTAAAGATCA
GATTTTT