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Detailed information on CNT3091744


BLAST search results

BLAST vs Swiss-Prot:
sp|P10647|RBS1_SOLTU, E-value = 1e-64

BLAST vs NONCODE:
NONCQUT001608, E-value = 3e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30279731Solanum tuberosumChenopodium quinoa20.5716.1286.26211forward
CNT30727210Solanum tuberosumCorchorus capsularis20.578.2281.99211forward
CNT30402284Solanum tuberosumBeta vulgaris9.2643.3892.6395forward
CNT30525466Solanum tuberosumPhaseolus vulgaris19.4967.3482200forward
CNT30629679Solanum tuberosumVigna unguiculata19.236.0185.28197forward
CNT30712618Solanum tuberosumGlycine max18.9133.2286.6194forward
CNT30508755Solanum tuberosumSolanum lycopersicum25.6398.8794.3263forward
CNT30623675Solanum tuberosumDaucus carota20.6611.7380.66212forward
CNT30573761Solanum tuberosumVitis vinifera8.7723.4488.8990forward
CNT30176025Solanum tuberosumVigna angularis18.2329.2282.35187forward
CNT30335392Solanum tuberosumCynara cardunculus19.224.1783.25197forward

Expression of CNT3091744

Peptides detected in this lncRNA

>peptide 1 (44 aa)
PLKHSLYLSSPILKFFLHLHPSPHLSFTNHKTQHLIHIIKCKLY*

Sequence

>CNT3091744
CCCCATTGAAGCACTCCTTATACCTTTCTTCTCCCATATTAAAATTTTTCCTTCATCTTCATCCCTCACCTCACCTTTCCTTCACTAATCACAAAACCCA
ACACCTAATTCATATTATTAAATGTAAACTTTATTGAATTTTAAGTAACCAATTTTGAATCCAATTAGTTGTGATGCAAAAAATGTGGGTCTATCAACTT
TCTTACACAACCTTCATTTTTCATTTGAGTTGTTAAGCAAAAAATAACTTTCACAAAATATTATTCTCCAAGGGGCAGATTTGTGGGAGAGAGAGGGTTC
GAAGAAGAAAAAGCAATGAAACTGATGCACTGCACTTGACGAACGTTGTCGAATCCGATAATACGGATCCAGGCCTGTGGGTACGCATTCTTGGCCTCTT
GAACCTCAGCCAACACCTGGGTTGCGTCAGTGCACCCAAACATAGGCAACTTCCACATGGTCCAGTATCTACCATCGTAGTATCCTGGTGAGCTGTTGTG
CTCACGGTACACAAATCCGTGCTGTACACAACAATATAACATACATTTATTTTCTCCTTCAACAAATTAAATTACACATGTAAAAGTATGTAGGAGATAT
TGACCTCAGTCTCGAATTCCAAGCAAGGAACCCATCCATTTTTCAAAAGGTACTCAACTTCCTTGAGCAATTGCTCATCGGACAAGTCAGGAAGCAAGGG
AAGTAATGTCAACGTTGTTGTTCTTCTTAGTAACGGGGAAAGACGCGGCGGATTTGAGTCCGGTGAAGGGTGCGACCATGCTAGCTTGAGCAACATTGCT
ACGGGTAGCAACGGCTGCTGAGGAGACAATTGAGGAAGCCATTACGTTACTACTTAGCTATAAAACGTTTTTTTTTTTTTTACTTCAAAGAAACTTGTTT
TTTTTTTAAGATGCTTATTACACTGTGGCTTACTCCCTTTATATAATGATAAGGTGTTAGACGTTTTTTTTAATCTAACGGATAGAAACAAAGGAAACCT
CATCTTAGATGAAGGGTGACCATTGG