Detailed information on CNT30514845


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 2e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727193Juglans regiaCorchorus capsularis41.1624.2781.29417forward
CNT30623675Juglans regiaDaucus carota20.8311.6882.46211forward

Expression of CNT30514845

Peptides detected in this lncRNA

>peptide 1 (33 aa)
EFKCLEYVERQNMNFNRNKLKASKTCRKEKGFN*

>peptide 2 (52 aa)
MYTSLLVVSSSIRDFPYLFHLYINIQILSFCFFVRVFLLVSWYAIETHSLYW*

>peptide 3 (36 aa)
MHWGIPSCTPQALSGPEKSRCSQTWGASTLPKKGFN*

>peptide 4 (34 aa)
MKLMHCTWRLLSNPMIRTNALGYSFLHSSSSFRT*

>peptide 5 (34 aa)
MKLMHCTWRLLSNPMIRTNALGYSFLHSSSSFRT*

>peptide 6 (98 aa)
MGSFHITQKGIQLDVAWRLVGNETDALHLALVVKSNDTNECIGVFLLALLKLFQDLRRVGAAKHGELPHYPVATIVVPWRSIVLTVNEAVLHKCIHHC*

>peptide 7 (52 aa)
MHWGIPSCTPQALSGPEKSRCSQTWGASTLPSSDHRSTLEIYCSHGKRSRAA*

>peptide 8 (81 aa)
MQERKGIQLDVAWRLVGNETDALHLALVVKSNDTNECIGVFLLALLKLFQDLRRVGAAKHGELPHYPKRDSIRRGLEACRQ*

Sequence

>CNT30514845
AAGAATTCAAATGTCTGGAGTACGTTGAAAGACAAAACATGAACTTCAATCGCAACAAATTAAAAGCTAGCAAGACATGCAGGAAAGAAAAGGGATTCAA
TTAGACGTGGCTTGGAGGCTTGTAGGCAATGAAACTGATGCACTGCACTTGGCGCTTGTTGTCAAATCCAATGATACGAACGAATGCATTGGGGTATTCC
TTCTTGCACTCCTCAAGCTCTTTCAGGACCTGAGAAGAGTCGGTGCAGCCAAACATGGGGAGCTTCCACATTACCCAAAAAGGGATTCAATTAGACGTGG
CTTGGAGGCTTGTAGGCAATGAAACTGATGCACTGCACTTGGCGCTTGTTGTCAAATCCAATGATACGAACGAATGCATTGGGGTATTCCTTCTTGCACT
CCTCAAGCTCTTTCAGGACCTGAGAAGAGTCGGTGCAGCCAAACATGGGGAGCTTCCACATTACCCAGTAGCGACCATCGTAGTACCCTGGAGATCTATT
GTTCTCACGGTAAACGAAGCCGTGCTGCATAAATGTATACATCACTGTTAGTCGTCAGCTCATCTATCAGAGATTTTCCATACCTGTTTCATCTTTATAT
CAATATACAGATTTTATCTTTTTGTTTTTTTGTCCGAGTCTTTCTACTTGTAAGTTGGTATGCGATCGAGACACATTCTTTGTATTGGTGAGACATGTTA
CAATTTGATTTGTAATCAGCTTTGAAACTGCCAAAACCAACATCAGTTCTCACAGAAAACATGTTAAAAGGCTGTGGAAGCCCTTAGACCATACTGTTTG
TTGTTGAAGTAAAAACGTTTATCTGTGGTGCTTTATGAACTAAAAAAAGAAAAGAATAAAAACTACTACTAGTAGATAATACACTGTAGAAAATATAGTT
TTATTTTTCAAATGTGCAAGAGTAAGATCTTGCTGGTGTCTTTTAGATGTGATTACTGTAGTTTAAGTGCTAATTAATTAACAAAATAAACAAGGCATAT
GTAAGTAAAAGTG