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Detailed information on CNT30355778


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 1e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535503Lactuca sativaEucalyptus grandis24.9422.7183.67196forward
CNT30378481Lactuca sativaArabidopsis thaliana22.1420.7185.06174forward
CNT30727206Lactuca sativaCorchorus capsularis26.599.0781.34209forward
CNT30543822Lactuca sativaBrassica napus21.8859.3182.56172forward
CNT30235546Lactuca sativaBrassica oleracea22.5221.3383.05177forward
CNT30311740Lactuca sativaCamelina sativa22.0131.7485.55173forward
CNT3062250Lactuca sativaArabidopsis lyrata22.2616.4583.43175forward
CNT3075084Lactuca sativaBrassica juncea22.5220.3983.62177forward
CNT30261239Lactuca sativaBrassica rapa22.5222.4183.05177forward
CNT30623675Lactuca sativaDaucus carota26.5911.5782.3209forward
CNT30479552Lactuca sativaArabidopsis halleri22.2630.4983.43175forward
CNT30573761Lactuca sativaVitis vinifera10.5621.6187.9583forward
CNT30705707Lactuca sativaPrunus avium21.51582.25169forward
CNT30335392Lactuca sativaCynara cardunculus26.9726.0190.09212forward
CNT30725197Lactuca sativaLupinus angustifolius24.5527.3481.87193forward
CNT30115242Lactuca sativaEutrema salsugineum18.1928.5483.92143forward

Expression of CNT30355778

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MNPIRVNPKFWCLENAWGLGNDETDTLHLTNVVESNNTDEGVGVLLLALSNLLHDLS*

>peptide 2 (43 aa)
TPNVYYHYYNLYMTSLIHFIGNPETNNERKRKRKISRKRITKT*

Sequence

>CNT30355778
ACACCAAATGTTTATTATCATTATTATAATTTATATATGACATCTCTTATCCATTTCATCGGAAATCCGGAAACAAACAACGAAAGGAAGAGAAAAAGGA
AAATTTCAAGGAAAAGAATTACAAAAACCTAAACATTCAAATGAACCCGATTCGAGTCAATCCAAAGTTTTGGTGCTTAGAGAACGCCTGGGGGCTTGGC
AACGATGAAACTGATACATTGCACTTGACGAATGTTGTCGAATCCAATAACACGGATGAAGGCGTTGGGGTACTCCTTCTTGCACTCTCCAACCTCCTTC
ATGACCTGAGCTGAGTCAGTGCATCCGAACATAGGCAACTTCCACATTGTCCAGTATCTTCCATCATAGTATCCGGGGGAATGGTGGTGCTCACGGTAAA
CGAAACCATGCTATACCACAAATATAAATACTCACTTTAGATGAATTCATTATGTTTTGTTTATATATAATCAATTAATAAATTAAGTTAATAAAAAGAT
GATAAGAAATAGACCTCCAACTCGAATTCCAAGCATGGAATCCACTTGTTGCGGATAAGGTAGTCGATTTCCTTAGACAATGCCTCGTCGGACAATGGTG
GTAGGGATGAAAAGTCATTGTTAGCCTTCTTGGTAACTGGGAAAGCTACGTTAGACTTGAGGCCGGTGAATGGAGCTGCCAAGCTAGCTTGGGTGGAGGT
GGTCCGGTTGACGGTGGCGATGGCTGAGGAGGAGATGGAGGCCATTTGAATAGTTAGGAATGGATTCAAGAATCCAGTGAGTGATT