CANTATAdb - search

Detailed information on CNT30616216

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30538793	Sesamum indicum	Brassica napus	4.93	20.21	93.59	78	forward
CNT30260341	Sesamum indicum	Brassica rapa	5.05	20.1	90	80	forward
CNT30609975	Sesamum indicum	Gossypium raimondii	4.86	20.32	89.61	77	forward
CNT30620847	Sesamum indicum	Cajanus cajan	4.93	21.79	91.03	78	forward
CNT30429165	Sesamum indicum	Papaver somniferum	5.12	22.82	93.83	81	forward

Expression of CNT30616216

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MGRRFVVRTSFCFVLSCLASGIDYSKFCKWSCLITCSIPI*

>peptide 2 (50 aa)
MQHFTQRRAKSNLVAMIINSRERDCSTKSTVCYHKNECSKYPIFSLGYLL*

>peptide 3 (37 aa)
MFQVPYFQPRVSSLMYKTPPSIELNKFAKIIIPIKYR*

Sequence

>CNT30616216
ATGACGCAAGAATATTACTCGGGTACTCGGGATCGGAAGCCTTGCGAAATTAGGGTTTTGCCATTCCTTATAAGTTCATATTAACAGCGACTTTTGTTAC
TCCCTATTGCGCCGCGTAGGAGATTTCCAGGACTTGTATTGTCATCGAGAGCTAGAAACAGAGCGGTGAAATTTTCTGATCCGACATGAGGGCGAAGTGG
AAGAAGAAGCGCATGAGGAGGTTGAAGAGAAAGCGCAGAAAGATGAGACAAAGATCTAAGTAGAGGGTTGACATGGATGGGGAGACGCTTCGTTGTGCGA
ACCAGCTTCTGTTTTGTCCTTAGCTGCCTGGCCAGTGGGATCGACTATAGCAAGTTCTGTAAATGGAGCTGCCTTATTACCTGTTCTATTCCTATTTAGG
GACTTAGTTTCAGGTTTTGTATGACTTTTCTAAGTAGTCTTTGGTTGACTTTATGAAATTTTTGCTGCTGGTCTTATTCTGATGAGTGACTTGTTAAATC
GTACTCTCCACTCATCTAAACCTTGTTATCCGAATTGATATTTTCTTCAGGCTTGCTGATCGTCTGTTTGAATCCTTTTTCTCTTAGGTCCCTGCTTCTA
GTCTGCAGGGGAGTTTTTGTTTCTCTTGGTTGGAATTGCACCTGGTTGGGGATCGGGGATGTTGATGTCTTAGGCATTCTTCAAATGCTTGACTGTATCA
CAATGATATTGTGGGCAAGCACAACCAAAAGGGAAACGATTTGACTGAGAGTTTTGGTGAATTTCCAGATTTATTGCACGCATTCTGTCCTTACCCTCCA
CTTTTCACCTCCTTTTCTAAACAAATTTTTTGAACACCCTCCACTTCTAAATCACTTAAATGTAGCACAAGAGTATGCATAGTTGCAACCACTAATTATG
CTTCTTGGTTATTTATTTAAACATAATTAATTCTTTTCAGAGCTGAAGCTCTTGTCTACATTGAATTTTTCCGTGCTCAATTTTCAACTCAATTCTACTG
AAAGTGAAAGTGGTTTTTAATTCTGGATACAAGACTTGTTCCAGTTAATGGGGTTTGGGCAGGGATGTGAAATTATAGTTATTCGTTGAATTGTCTTTAC
ATTGAACTTTCCGTACTCAAGGCAAGCAGGGTAGAGTAAGGTTTCATAAATCGAATGCTTTTCATCATAAGGTTCCAGACCGAAGAATTTCACACCCAAA
ATGCCTTCTTTGAGTGAGGAAGAGAGCTGCGTCAACATTTCTTCAATTTGATGTGAAGAATACCTCATATTAATTGTGTCAAAGAGCACTAAGAATCATT
GTGTACAGCAAAATCTTGGTGCTTGTAAAAGAAATGCAGCATTTTACACAACGGAGAGCTAAGAGCAATCTAGTTGCAATGATAATAAACTCGAGGGAGA
GAGATTGTTCTACTAAATCCACCGTCTGCTACCATAAAAATGAATGTTCCAAGTACCCTATTTTCAGCCTAGGGTATCTTCTCTAATGTACAAGACTCCC
CCATCTATAGAACTCAACAAATTTGCTAAGATCATCATCCCAATAAAATATAGGTGATGCCTAACCGTTGCACCACTCATTGC