Detailed information on CNT30260341


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616216Brassica rapaSesamum indicum20.15.059080forward
CNT30631133Brassica rapaVigna unguiculata20.612.8192.6882forward
CNT30487554Brassica rapaOlea europaea20.113.4993.7580forward
CNT30635817Brassica rapaCapsicum annuum20.614.8891.4682forward
CNT3094818Brassica rapaSolanum tuberosum20.617.7591.4682forward
CNT30538256Brassica rapaBrassica napus99.2595.6499.49395forward
CNT3060259Brassica rapaArabidopsis lyrata21.8610.4196.5587forward
CNT3074464Brassica rapaBrassica juncea97.9994.299.49390forward
CNT30611888Brassica rapaArabis alpina25.8821.1198.06103forward
CNT30597553Brassica rapaFraxinus excelsior20.116.8892.580forward
CNT30626608Brassica rapaDaucus carota22.3610.4791.0189forward
CNT30429165Brassica rapaPapaver somniferum21.3623.9492.9485forward
CNT30704139Brassica rapaPrunus avium20.8516.4492.7783forward
CNT30642554Brassica rapaCannabis sativa20.614.2192.6882forward

Expression of CNT30260341

Peptides detected in this lncRNA

>peptide 1 (60 aa)
ADHQNLSSYSAAFLICLDLKPHPEEGKGESSEATSMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 2 (42 aa)
MFLLDQAMISIRILMFITWENPRLGSRFILFIFYSLLIIVVR*

Sequence

>CNT30260341
AAGCTGACCATCAAAATCTATCTAGCTACTCCGCCGCTTTTCTCATTTGCTTAGATCTAAAACCCCATCCAGAGGAGGGAAAGGGTGAATCTTCTGAGGC
AACCAGCATGAGGGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGAGACGAAAGATGAGACAGCGATCTAAGTAGATTCGTAACCTGTTT
TTGTCTCTTTACCGACATTTGTGAGAGTTTTGTTGGTTTTCTGTCTACATTTTAATGTTTTTGTTGGACCAAGCTATGATTTCAATCAGAATACTTATGT
TTATTACATGGGAGAATCCACGACTTGGTTCTCGATTTATCCTCTTTATTTTCTACAGTCTGCTTATAATCGTGGTTAGATGAATGATGATGATCTTA