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Detailed information on CNT3061383


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317675Arabidopsis lyrataCorylus avellana10.1323.0593.5562forward
CNT30236394Arabidopsis lyrataBrassica oleracea12.092010074forward
CNT30310165Arabidopsis lyrataCamelina sativa30.7233.1692.55188forward
CNT3075181Arabidopsis lyrataBrassica juncea12.0920.2710074forward
CNT30261820Arabidopsis lyrataBrassica rapa12.0923.6410074forward
CNT30478055Arabidopsis lyrataArabidopsis halleri48.3767.8996.62296forward
CNT30572709Arabidopsis lyrataVitis vinifera11.623.9994.3771forward
CNT30115398Arabidopsis lyrataEutrema salsugineum23.3729.1890.21143forward

Expression of CNT3061383

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLKAYMFIGLVSLSRVWRIYIPSFIISGLSRHD*

Sequence

>CNT3061383
CGGAGATTAGGGTTTTAGCCGGAACTTCAGAAATGAAGAAGACAGTGTTAAAGACTGCACTTGAGATTATTGGGCTAAACTTGTTTTAAAGGCCCATAAA
TAAATAAAGGGCCATAAATAAATAAAGGCCCAATGTTAAAAGCCTACATGTTCATTGGTCTCGTTTCATTGTCTAGGGTTTGGAGAATATATATTCCATC
TTTCATCATCTCCGGTCTCTCTCGCCACGATTAGGGTTTTGAGCAAAAAGGAGTGATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGG
AAGAGACGAAAGATGAGACAGCGATCTAAATAGACCAAATCTACTCCGCAAGTCTTTCGCTTTCCCCTCTGCATTTGTGTTTCGTTTGCTTCAGTTATTT
CCCAGATATTTGATACTACCTTTGTCTTAGTTTCAATCAATGTTAACCTTTATCTTGCTTCGCCATTTAACTTGCGATTTAATCTATGTCTCTTGCTTGT
TTCATTTCAAACGTAGCTACTAGCTCTTAGTGATCATAGACAGATCAAATCGTAAAGAACTGATCTTTTAGTTTGAAATTCAGTGGGAAATCTTGTATAG
ACCATTGTCGCG