Detailed information on CNT30105287


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU35|ERLL1_ARATH, E-value = 4e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691960Oryza longistaminataOryza sativa55.2102.0784.93345forward
CNT30553261Oryza longistaminataOryza glaberrima90.72104.8189.95567forward
CNT30596824Oryza longistaminataOryza meridionalis34.5634.7891.2216forward
CNT30100949Oryza longistaminataOryza rufipogon92.4885.6391.7578forward
CNT30116313Oryza longistaminataOryza nivara80.890.0290.5505forward

Expression of CNT30105287

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRSIEYKLINQLCRYTHTRRRMKHALITSWN*

>peptide 2 (62 aa)
MGRSASPWMRLQHGCRGGVPSCTFISPFSTFAHTPSFSVSIGHLPPLPPPPPPPLPPPPPLPP

>peptide 3 (90 aa)
MDGAAALVAALEAGRDGAAAVVDEEAEVDGEVGEPLDEAATRLPRRRPQLHVYQPVQHVRAHPQLQRVDRASSSASSSPAAAASSSSAASS

Sequence

>CNT30105287
CGAACAAGAGCTAGCTAGTACAGTACGTGTAGAACAGGCATGCAGAAAAGACGAGATGCAGTACGTACTGATATGATGCATATACGATGAGATCCATCGA
GTACAAATTAATTAATCAATTATGCAGATACACACATACACGTAGACGAATGAAGCATGCTTTAATTACGTCGTGGAACTGAATCATATGCATGCATATA
TATCTCTTTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGACGATGATTTGAACAAGGAACAAATTAGACATAGATAGATTGATAT
ATAGTTGTACGTGGCCTGGTGGTCGTTCTTCGTTCTCGTGTGTAGTGAGGAATGGATGGAGCTGCAGCTCTAGTTGCTGCACTGGAAGCCGGAAGGGACG
GAGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTCGGCGAGCCCCTGGATGAGGCTGCAACACGGCTGCCGCGGCGGCGTCCCCAGCT
GCACGTTTATCAGCCCGTTCAGCACGTTCGCGCACACCCCCAGCTTCAGCGTGTCGATCGGGCATCTTCCTCCGCTTCCTCCTCCCCCGCCGCCGCCGCT
TCCTCCTCCTCCGCCGCTTCCTCCA