Detailed information on CNT3059440


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9TJQ8|EFTU_PROWI, E-value = 3e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440878Arabidopsis lyrataAegilops tauschii40.1730.6689.63241forward
CNT30624959Arabidopsis lyrataDaucus carota54.8396.7684.19329forward
CNT30151899Arabidopsis lyrataPrunus persica47.525.8487.37285forward
CNT3037774Arabidopsis lyrataCucumis melo75.3358.4785.84452forward
CNT3050294Arabidopsis lyrataCucumis sativus88.1786.384.69529forward

Expression of CNT3059440

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MMMTWEVKLAAPLAGSSFELEATYPLLRSFTATFLTLNPTLSPGSASRRDSWCISTDLTSVVNPVGAKVTTIPGLIIPVSTRPTGTVPIPPIL*

>peptide 2 (48 aa)
GQDLRELDCNVRGVAIEDRGVTVTNLTRVVHDDDLGGEVGCSLGRVIL*

Sequence

>CNT3059440
TTGGTCAAGATCTCAGAGAACTTGACTGCAATGTGAGAGGTGTGGCAATCGAGGACAGGGGCGTAACCGTTACCAATCTGACCAGGGTGGTTCATGATGA
TGACCTGGGAGGTGAAGTTGGCTGCTCCCTTGGCAGGGTCATCCTTTGAGTTGGAGGCGACGTACCCTCTCTTAAGATCCTTCACGGCAACATTCTTAAC
ATTGAACCCAACATTGTCACCGGGAAGTGCCTCAAGAAGAGACTCGTGGTGCATCTCAACAGACTTGACCTCAGTGGTCAACCCTGTGGGAGCAAAGGTC
ACGACCATACCAGGCTTGATCATACCAGTCTCAACACGTCCCACTGGCACCGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGGAGACGAAGGG
GCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGAAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTT
GTCTCCCTCGAATCCAGAGATGGGCACAAACGGGATTTTGTCGGGGTTGTAACCAACCTTCTTCAAGTAGGAAGACACCTCCTTGATGATTTCATCGTAC