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Detailed information on CNT30440878


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673325Aegilops tauschiiSetaria viridis32.747.2491.83257forward
CNT3021028Aegilops tauschiiCitrullus lanatus31.1719.7388.16245forward
CNT30727588Aegilops tauschiiCorchorus capsularis31.9318.6890.44251forward
CNT30380192Aegilops tauschiiManihot esculenta31.1710.7490.2245forward
CNT30525464Aegilops tauschiiPhaseolus vulgaris22.0130.6287.86173forward
CNT30629687Aegilops tauschiiVigna unguiculata33.5913.3787.12264forward
CNT30160120Aegilops tauschiiPistacia vera31.9320.1991.63251forward
CNT30296842Aegilops tauschiiTriticum aestivum30.9234.8696.71243forward
CNT30387906Aegilops tauschiiTriticum turgidum33.9727.5394.76267forward
CNT30540416Aegilops tauschiiBrassica napus30.6665.4991.29241forward
CNT30509929Aegilops tauschiiSolanum lycopersicum19.0870.0992150forward
CNT30146188Aegilops tauschiiMedicago truncatula31.5531.5987.9248forward
CNT30248159Aegilops tauschiiAvena sativa32.723.4792.61257forward
CNT30310177Aegilops tauschiiCamelina sativa30.6620.7890.46241forward
CNT3059440Aegilops tauschiiArabidopsis lyrata30.6640.1789.63241forward
CNT3079066Aegilops tauschiiBrassica juncea30.6620.1890.87241forward
CNT30598511Aegilops tauschiiFraxinus excelsior31.9338.5686.85251forward
CNT3015474Aegilops tauschiiZea mays33.0845.2290.38260forward
CNT30647369Aegilops tauschiiRosa chinensis31.9327.787.65251forward
CNT30685754Aegilops tauschiiTriticum urartu46.3121.9497.53364forward
CNT30368719Aegilops tauschiiSorghum bicolor53.0530.886.33417forward
CNT30355521Aegilops tauschiiLactuca sativa31.9326.3188.05251forward
CNT30706378Aegilops tauschiiPrunus avium31.1721.6890.61245forward
CNT3024873Aegilops tauschiiPopulus trichocarpa31.9344.590.04251forward
CNT3037774Aegilops tauschiiCucumis melo29.6430.1489.27233forward
CNT30147611Aegilops tauschiiBrachypodium distachyon25.5733.595.52201forward
CNT30580076Aegilops tauschiiEchinochloa crusgalli33.0819.6591.15260forward
CNT30116111Aegilops tauschiiOryza nivara33.5930.1792.8264forward
CNT30594546Aegilops tauschiiEragrostis curvula33.9756.4592.88267forward
CNT30176122Aegilops tauschiiVigna angularis33.5923.3285.98264forward
CNT30726329Aegilops tauschiiLupinus angustifolius33.4657.4287.45263forward
CNT3050518Aegilops tauschiiCucumis sativus28.8836.5588.55227forward

Expression of CNT30440878

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MAALVTLAPVGSFFSTPLMTPTATVCLISRTAKRPRGG*

>peptide 2 (33 aa)
MMMTWEAQFQCHQSCKHPEGEDAGACLRASWAR*

>peptide 3 (64 aa)
MGLELGQRLQLLTRSPVDLGHQLSKLDSNVGGVAVQHWGIAVTDLTRVVHDDDLGGTVPMPPIL*

Sequence

>CNT30440878
GCAGACAAAACCACAAATGGGATGAGAGCACAATAATGGAATCGAAATAGAGTATTTAAACGACACATCATAGCTCGCACACAGGTGCAGGAGTCAAAGT
GCAACAACGCCCAGGAATAACACTTAACATACACTAAGATTCTCCAAAAAAGACTTGACACTAAAACTTCTGCTAGATAACTCGATGGCAGACACCAGAG
CACTCATTTCTTCTTGATGGCAGCCTTGGTAACCTTGGCACCGGTGGGGTCCTTCTTCTCCACGCCCTTGATGACACCAACAGCAACCGTTTGTCTCATA
TCACGCACAGCAAAGCGGCCAAGAGGAGGGTAGGTGGCGAAGGTCTCCACAACCATGGGCTTGGAACTTGGGCAGCGCCTCCAGCTCCTTACCAGATCGC
CTGTCGATCTTGGTCACCAGCTCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCATAGCCGTTACCGATCTGACCAGGGTGGT
TCATGATGATGACCTGGGAGGCACAGTTCCAATGCCACCAATCTTGTAAACATCCTGAAGGGGAAGACGCAGGGGCTTGTCTGAGGGCCTCTTGGGCTCG
TTGATCTGGTCAAGAGCCTCAAGAAGGGTAGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAACCCAGAGATGGGGA
CGAAGGGAACCTTGTCAGGGTTGTAGCCAACCTTCTTCAGGTACGAAGAGACTTCCTTGACAATTTCCTCATAACGAGCCTTCGAG