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Detailed information on CNT30580872


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 1e-140

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671567Echinochloa crusgalliSetaria viridis30.1347.7691.06235forward
CNT30656512Echinochloa crusgalliTriticum dicoccoides25.3836.891.92198forward
CNT30370632Echinochloa crusgalliOryza glumipatula45.3845.9791.24354forward
CNT30496156Echinochloa crusgalliDigitaria exilis40.3833.9492.7315forward

Expression of CNT30580872

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MQPSAPSMAQRPWITSRALFRANASGSAESPAVSQP*

>peptide 2 (40 aa)
KNSSSTFLNPENTIFAFIGGGGTNVMSQTSSLQWWHKEAV*

>peptide 3 (44 aa)
MACTKNPNMENMARRPFLISFTLSSAKVTGSSARPNGSKYWPPG*

Sequence

>CNT30580872
CAAAAACTCCTCCAGTACATTCCTGAATCCTGAGAACACGATATTTGCATTCATTGGTGGTGGTGGTACAAATGTGATGTCACAAACGAGTAGTCTACAA
TGGTGGCACAAAGAAGCCGTCTAGCTTAAGACCCTGGCGTGAACTTGGTGGCGTAGACCCATGCGTTGTTGGCGACGGGGTCATCAAGGTGGTCGAGCAG
GTTCTCGAGTGGGCCCTTGCCGGTGACAATGGCCTGCACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGC
TCGGCGAAGGTGACCGGGTCGTCGGCGAGGCCCAATGGGTCGAAGTACTGGCCGCCGGGGTAGAGGATGACCTGGAAGCCCAGCACGGCGAGGATGCTCT
GCGCGTGCACCAGGTTTGGGTTGCCCAGGTAGTCGAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACGGGCTCCTTGAAGTCCACGCG
CACCCACTTCTCCAGCACCTCCGGGGTGATGCAGCCCAGCGCGCCCAGCATGGCCCAACGCCCGTGGATCACCTCCAGGGCCCTGTTCCGGGCGAACGCC
TCCGGGTCCGCGGAGAGCCCGGCCGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTACGAGGGCGTCTGCGCCGAGAAGGGGCCCAGGTACT
TGACGCGGTCCGGGCCGTACCACAGGTCGTTGCTCTGCAAATGAAACGCCGCGACTTGTTGGTTAGCAAGCACTACGCTC