Detailed information on CNT30671567


BLAST search results

BLAST vs Swiss-Prot:
sp|P14584|CB21_RAPSA, E-value = 2e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520434Setaria viridisSetaria italica61.7981.72100304forward
CNT30132084Setaria viridisLolium perenne38.2122.3888.83188forward
CNT30580872Setaria viridisEchinochloa crusgalli47.7630.1391.06235forward
CNT30556505Setaria viridisPanicum hallii48.1733.9194.94237forward

Expression of CNT30671567

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MVAGTKQPSSFLRPGRELGGVDPGVVCDGVVEVVEQVLEGPLAGDDGLHEESEHGEHGEASVLDLLDLELGEGGGGHDRCHPS*

>peptide 2 (54 aa)
MACTKNPNMENMARRPFLISLTLSSAKVAAAMIDAIPRSLLLCCGGTALRGCQG*

>peptide 3 (38 aa)
ELKCKEAATCIDRKSAVQHIICFRSTQATTDREHNAHS*

Sequence

>CNT30671567
TGAACTGAAATGCAAAGAGGCAGCTACATGTATAGATCGTAAATCAGCAGTTCAGCACATCATCTGTTTCAGGAGCACACAAGCCACAACTGACAGAGAG
CATAATGCACATTCCTGAATCCTGAGAACAAGGTATTTGCATTAATTGGTGGTACAAAAGTAACGAGTAGTCTACAATGGTGGCAGGCACGAAGCAGCCG
TCTAGCTTCTTAAGACCCGGGCGCGAACTTGGTGGCGTAGACCCAGGCGTTGTTTGCGACGGGGTCGTCGAGGTGGTCGAGCAGGTTCTCGAGGGGCCCC
TTGCCGGTGACGATGGCCTGCACGAAGAATCCGAACATGGAGAACATGGCGAGGCGTCCGTTCTTGATCTCCTTGACCTTGAGCTCGGCGAAGGTGGCGG
CGGCCATGATCGATGCCATCCCTCGTAGCTTGCTGCTCTGCTGCGGCGGCACTGCACTGCGGGGGTGTCAAGGCTAGGAGAGGGGTTGCGTG