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Detailed information on CNT30496156


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 4e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671650Digitaria exilisSetaria viridis16.9239.8593.63157forward
CNT30221290Digitaria exilisHordeum vulgare13.1555.7189.34122forward
CNT30656512Digitaria exilisTriticum dicoccoides21.6637.3692.04201forward
CNT3013167Digitaria exilisZea mays33.339.9792.56309forward
CNT30580872Digitaria exilisEchinochloa crusgalli33.9440.3892.7315forward

Expression of CNT30496156

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MQPRAPSIAHRPWITSSALLRANASGSAESPAVSQP*

>peptide 2 (58 aa)
MVIRPVAAAMIDDAILVVGVVAFCCSAAAAAAALAVAGVLVERSLRGRICSTSVFVAFL

Sequence

>CNT30496156
TGGAACTGAAATGCAAAGCAGCAGCAATATATATGGATCATAAATAAAAACAGCACAAAATCAGTTTCAGGAGCACACAGGCAAGTCACAACTGACACCA
AGCACACTGCAAACCCAAAAACTCTAGTACAGTCCTGAATCCTGAGATCACAATATCTGCATTCATTGGTGGTACAATGGTAGTGTTACAAACGGGTAGT
CTACACTGGTGGCCCGAAGGAAGAGGCCGTCGTCTAGCTTAAGACCCTGGCGCGAACTTGGTGGCGTAGACCCAGGCGTTGTTGGCGATGGGGTCGTCGA
GGTAGTCGAGCCCTCCCTCGGAGAAGATCTGCGCCCCGGCCTTGAACCACACGGGCTCCTTGAAGTCGACGCGCACCCACTTCTCGAGCACCTCGGGGGT
GATGCAGCCGAGAGCACCGAGCATCGCCCACCGGCCGTGGATCACCTCCAGCGCCCTGTTGCGCGCGAACGCCTCCGGGTCGGCGGAGAGCCCCGCCGTG
TCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGGAGGGTGTCTGCGCAGAGAAGGGGCCCAGGTACTTGACACGGTCGGGGCCGTACCACAGGT
CGTTGCCCTGCAAAAATTAAAGCGCGCGCACGCACCGGCGTGTTCGTTAGCACGGAGCTCTCGGAAGCAGACGGCCATGGAGTGAGTACTGGTGCTTTAT
GTAATATAAAATGGCTTTGGGATTGAAGTGGGCTAAGACTACGACGTACCATGGTGATCCGGCCGGTGGCGGCGGCCATGATCGATGATGCCATCCTCGT
CGTCGGCGTCGTAGCTTTTTGCTGCTCTGCTGCGGCGGCGGCGGCGGCACTGGCAGTGGCAGGGGTGTTGGTGGAGAGGAGTTTACGTGGCCGTATTTGT
AGCACAAGTGTTTTTGTTGCTTTCCTTC