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Detailed information on CNT30370632


BLAST search results

BLAST vs Swiss-Prot:
sp|P12332|CB21_SILLB, E-value = 2e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671650Oryza glumipatulaSetaria viridis20.2639.5994.23156forward
CNT30520579Oryza glumipatulaSetaria italica31.5622.9794.24243forward
CNT30554485Oryza glumipatulaOryza glaberrima40.3955.8399.04311forward
CNT30243592Oryza glumipatulaAvena sativa44.0343.8687.61339forward
CNT30454287Oryza glumipatulaSaccharum spontaneum41.0455.2492.41316forward
CNT30132048Oryza glumipatulaLolium perenne44.0336.1888.5339forward
CNT3013167Oryza glumipatulaZea mays44.1643.9890.88340forward
CNT30148272Oryza glumipatulaBrachypodium distachyon45.1936.7589.37348forward
CNT30580872Oryza glumipatulaEchinochloa crusgalli45.9745.3891.24354forward
CNT30496441Oryza glumipatulaDigitaria exilis39.4837.3991.45304forward
CNT30604338Oryza glumipatulaOryza punctata31.5635.9595.06243forward
CNT30556551Oryza glumipatulaPanicum hallii32.0841.8693.93247forward

Expression of CNT30370632

Peptides detected in this lncRNA

>peptide 1 (37 aa)
QISNNQTLGLVWIITKYTNVQIKPSKELTKLKAAADT*

>peptide 2 (37 aa)
MAPGTSPCPARTTAPCSAPPQPKNSYLATLPSLRPKI*

>peptide 3 (36 aa)
MQPSAPSIAHRPWITSSALFLANASGSAESPAVSHP*

Sequence

>CNT30370632
AGCAAATTAGCAATAATCAAACACTAGGTCTCGTATGGATCATTACAAAGTACACAAATGTACAAATTAAACCATCAAAAGAGTTAACTAAGCTTAAAGC
AGCAGCTGACACATAAGTTGCAAACCCCAACTTTTTTCAGTTTCTGAATTCTGGATGGATCATATCAGATTCATCACAGCATCGTACAATCTGTGCAAGC
ATTGGTACATCGAGCGATGGAGAGAGAGAGAGTAGTCTACAATGGCGGCTGGGCCATTCACGAGCCCGGCGTGAACTTGGTGGCGTAGACCCAGGCGTTG
TTGGCGACGGGGTCGGCGAGGATGCTCTGGGCGTGCACCAGGTTGGGGTTGCCGAGGTAGTCGAGGCCGCCGTCGGAGAAGATCTGGGCGCCGGCCTTGA
ACCACACGGGCTCCTTGAAGTCGACGCGCACCCACTTCTCGAGCACCTCCGGCGTGATGCAGCCCAGCGCGCCGAGCATCGCCCACCGGCCGTGGATCAC
CTCCAGCGCCCTGTTCCTCGCGAACGCCTCCGGGTCCGCGGAGAGCCCCGCCGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCCCTCAGGTACGACGGC
GTCTGCGCCGAGAATGGCCCCAGGTACTTCACCCTGTCCGGCCCGTACCACAGCTCCTTGCTCTGCACCCCCACAACCAAAAAATAGCTACTTAGCTACT
CTGCCCTCTCTCCGTCCAAAAATATAACAACTACTATGATGTATTCTCGAACATCTGATGATATTAGGTA