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Detailed information on CNT30656512


BLAST search results

BLAST vs Swiss-Prot:
sp|P27523|CB23_HORVU, E-value = 1e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671892Triticum dicoccoidesSetaria viridis32.937.990.96177forward
CNT30221118Triticum dicoccoidesHordeum vulgare23.6130.3893.7127forward
CNT30243592Triticum dicoccoidesAvena sativa39.0327.1794.76210forward
CNT30449902Triticum dicoccoidesSaccharum spontaneum34.0120.6594.54183forward
CNT30132048Triticum dicoccoidesLolium perenne36.4320.9293.88196forward
CNT3013167Triticum dicoccoidesZea mays35.1324.4594.71189forward
CNT30362471Triticum dicoccoidesSorghum bicolor32.7139.8289.2176forward
CNT30370794Triticum dicoccoidesOryza glumipatula52.0439.1688.93280forward
CNT30148272Triticum dicoccoidesBrachypodium distachyon37.1721.1289.5200forward
CNT30580872Triticum dicoccoidesEchinochloa crusgalli36.825.3891.92198forward
CNT30496156Triticum dicoccoidesDigitaria exilis37.3621.6692.04201forward
CNT30604338Triticum dicoccoidesOryza punctata39.4131.3686.32212forward
CNT30556551Triticum dicoccoidesPanicum hallii32.93089.27177forward

Expression of CNT30656512

Peptides detected in this lncRNA

>peptide 1 (94 aa)
KNPPNFEITSTIRCYLHTHTHGSSLHFTMATSASLRSRRKLGGENPCIVGDRVVGKAERVEVLAARVEVVALADTVETIDAEAFNQAHEKDLEA*

>peptide 2 (63 aa)
MRKPSTRPMRRTWKPSTARMLCAWTRLGFPRAPSIAHRPWITSSALFLANASGSAESPAVSQP*

>peptide 3 (34 aa)
KILQISRSHRPFVAICTHTHMGVVYTLQWQRRPA*

Sequence

>CNT30656512
AAAAAATCCTCCAAATTTCGAGATCACATCGACCATTCGTTGCTATTTGCACACACACACACATGGGAGTAGTTTACACTTTACAATGGCAACGTCGGCC
AGCCTAAGATCCAGGCGCAAACTTGGTGGCGAAAACCCATGCATTGTTGGTGACAGGGTCGTCGGCAAGGCCGAGCGGGTCGAAGTACTGGCCGCCAGGG
TAGAGGTCGTTGCCCTCGCCGACACCGTCGAGACCATTGATGCGGAAGCCTTCAACCAGGCCCATGAGAAGGACCTGGAAGCCTAGCACGGCAAGGATGC
TCTGCGCGTGGACGAGGTTGGGGTTTCCAAGAGCGCCGAGCATCGCCCACCGCCCGTGGATCACCTCCAGCGCCCTGTTCCTAGCGAACGCCTCCGGGTC
GGCGGAGAGCCCGGCGGTGTCCCAGCCGTAGTCGCCCGGGAACTCGCCGTTCAGGTAGGACGGCGTCTGCGCGGAGAAGGGGCCCAGGTACTTGACGCGG
TCCGGGCCGTACCACAAGTCGTTGCCCTGCGAGCGCGC