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Detailed information on CNT30580685


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LUV4|FRL4A_ARATH, E-value = 2e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694852Echinochloa crusgalliOryza sativa19.1733.787.57185forward
CNT3013831Echinochloa crusgalliZea mays78.0310086.32753forward
CNT30351493Echinochloa crusgalliEragrostis tef40.9382.4687.85395forward
CNT30102775Echinochloa crusgalliOryza rufipogon22.0723.9188.26213forward
CNT30576925Echinochloa crusgalliOryza barthii23.8325.787.83230forward
CNT30116217Echinochloa crusgalliOryza nivara14.8233.9790.21143forward

Expression of CNT30580685

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGKGRQWRMMHGKGRLWRMMRGKGRQWRMRCGKESEQMWWELGKKTRTCC*

>peptide 2 (52 aa)
TSSFNKDYMLIFLVFFPQFQIELHKATMRVSADTIHNLHPGSLVVVKSSGLG*

>peptide 3 (51 aa)
MHLVVGVVVRTYELRYPIYRCSQSLQNRAITRLQSLASSVVVMSFISDIFS*

>peptide 4 (36 aa)
MLPFSSRSWPSPVLRAASGDPPVETQLPAYGPQHTL*

Sequence

>CNT30580685
TACATCCAGTTTTAATAAGGATTACATGCTGATTTTTTTGGTTTTTTTCCCACAGTTCCAAATAGAATTACATAAGGCGACGATGAGAGTCTCCGCTGAT
ACCATACATAATTTACATCCAGGTTCCTTAGTAGTAGTAAAAAGTAGTGGTCTAGGATGAGACGAGTGCTAACACAACAAAATGCATCTAGTAGTAGGGG
TGGTGGTAAGAACATATGAGCTGAGATACCCAATCTACCGTTGTAGTCAGTCACTACAAAATAGGGCCATTACGCGATTGCAGTCGTTGGCATCATCAGT
TGTTGTCATGTCATTCATCAGCGACATTTTTTCCTGACTGAACCTACCGGTAGTAAGCCTGGTGGAAGGCAGGAGCCATTCCACTGTTGTAAGCTGCCAT
ACCGTTGCCATACCCACCATAGGGGGCAGGGTAGCTCATGGGTGGGGTGGAGTATGGCAACGCAATGCCGACATTTACGCTGGCTACTTCTTCAGCAGGG
TAAACATATGGCTCTCTGAAGGCCGGTGGGCTCCGGTTGCAGTATACATGACCAACCGGCCTGTCATATGGGTAAGGGGAGGCAGTGGCGTATGATGCAT
GGGAAGGGGAGGCTGTGGCGTATGATGCGTGGGAAGGGGAGGCAGTGGCGTATGAGGTGTGGGAAGGAGAGCGAGCAAATGTGGTGGGAGCTGGGAAAGA
AGACACGGACGTGTTGTTAGTTCGACCTGCCTTGGCAAGAGGCATTGGGCCTCCATTGCTTGCACGGATACGCTTGGTTGCAGGGCCACTGCTGCCGCCA
CTAGAAGCACTTGATGCTGCCTTTTTCTTCTCGGTCTTGGCCTTCTCCAGTTCTTCGAGCTGCTTCCGGAGATCCTCCAGTGGAAACTCAGCTTCCAGCT
TACGGTCCTCAACACACTTTATAACAGCTCTCAGCGCAGACTGCTCTTTCTTGTTCACATTGCTC