Detailed information on CNT30116217


BLAST search results

BLAST vs Swiss-Prot:
sp|Q940H8|FRL4B_ARATH, E-value = 1e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30580685Oryza nivaraEchinochloa crusgalli33.9714.8290.21143forward

Expression of CNT30116217

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MGRGANECGIGSGGGRGHRSSGACPDALVGWTRATTAGTA*

>peptide 2 (36 aa)
MPPFSSRSWPSPVLPAAHGDPPMETQLRVCGPQHTL*

>peptide 3 (84 aa)
MNVALVVVVAGGIGPPVLARMRLLAGPELPPLELLDAAFFFSVLAFSSSSSRSRRSSNGNSASSLWSSTHFITARSADCSFLLAL

>peptide 4 (55 aa)
GMTCRGRRWIPQMGGGMHRAPSLPVCSGHSRGGVQLAYHKSKEMLYRRRHGTGSE*

Sequence

>CNT30116217
GGTATGACATGCCGAGGCCGACGCTGGATACCTCAGATGGGTGGTGGTATGCATAGGGCTCCCTCATTGCCAGTGTGTTCTGGCCACAGTAGAGGGGGTG
TGCAGCTGGCCTATCATAAGAGTAAGGAGATGCTGTACCGTAGGAGGCATGGGACGGGGAGCGAATGAATGTGGCATTGGTAGTGGTGGTGGCAGGGGGC
ATCGGTCCTCCGGTGCTTGCCCGGATGCGCTTGTTGGCTGGACCAGAGCTACCACCGCTGGAACTGCTTGATGCCGCCTTTTTCTTCTCGGTCTTGGCCT
TCTCCAGTTCTTCCAGCCGCTCACGGAGATCCTCCAATGGAAACTCAGCTTCGAGTTTGTGGTCCTCAACACACTTTATAACAGCCCGCAGTGCAGACTG
CTCCTTCTTATTGGCATTGCT