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Detailed information on CNT30577325


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004907, E-value = 3e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694877Oryza barthiiOryza sativa19.733.4685.77274reverse complement
CNT30521524Oryza barthiiSetaria italica13.5952.9483.6189forward
CNT30554719Oryza barthiiOryza glaberrima83.0383.3399.911155forward
CNT30103030Oryza barthiiOryza rufipogon21.58.0787.63299reverse complement

Expression of CNT30577325

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MDLSSTSSYRSDEDIHCRRSRRLSSSSPASYS*

>peptide 2 (87 aa)
MDSSDWLPWIYPRRPHIEVMRISIAGGRAGYHRHLRQVIHEDACLLCHRKRVFKGWLSFICFVKEASTSNYRGPLRVCFLVFFHSCY*

Sequence

>CNT30577325
CTGGCTATACACGAGGATTAATCAGGTTTGAGACCAATTCAAATGAGACTAGGACGATAAAAGAATTAGGTATAAACGTGCATATGTAAAAGCATGTACA
ATAGACAACTTTAGCCAGCTATATTGCGTCCATGACTCTGCTGGAAAAACTGGTGATCTAGAAAAGGAAGGAGTGGAAGAAAAGATGGGCATGTGAAAAA
AGGTAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCACAGTGAGAACTCTCCAGGAGAAAAAAAGAGAGTGCTTCTTCCTCGTTCCGTCCGGCCCCTTTCC
CCATCAATTCAGACGACATTCACTCGTCGGTGATAGGAAAGAGGGTTTAGGTAGTCAGGTTCTTCCCGTAGTAGGGTCTTTCCCCTTCTTCTTTTTTTTG
GTTATTTTGGGTCTGTTGTACAGCACAAGAGGCTGTCTCTGTTGCAATTTCTCTTGTCTTGATGCTGCTACATGGATTCAAGTGACTGGCTTCCATGGAT
TTATCCTCGACGTCCTCATATAGAAGTGATGAGGATATCCATTGCAGGAGGTCGCGCCGGCTATCATCGTCATCTCCGGCAAGTTATTCATGAGGATGCA
TGCCTTCTTTGTCACCGAAAACGGGTCTTCAAGGGGTGGCTGAGTTTTATTTGTTTTGTTAAGGAAGCCTCAACCTCCAACTACAGAGGCCCCTTGCGGG
TATGCTTCCTGGTGTTCTTCCATAGCTGTTATTGATCTTCTTGCTCCTGTTGTCGTCACAAAAGATTTGGCCTTCATCTTGGTGGAAGAACGAAGGACTT
GATTGCTTTTTTTGTCTTTAGAAGGCCTTCTTTGCAAATTTCAGATATGTATCTCTTTTTGCCCATCTGTTAGGGGACTCTCTGCAAAACTGCATGTACT
TGCAGTTGTCTATCAATATATCCTAAGGTGGTGAGACTAAACTTTATTCCCTGTTACATCGATGTTTGGACATCAATTTGGAGTATTAAATATAGACTAT
TTATAAAACTAATTGCATAAATGAGAGCTAATTCGCAAGATAATTTTTTTAAGCCTAATTAATCCATAACTAGCACATGTTTACTGTAGCATCACATAGG
CTAATCATGTATTAATTAGGCTCAATAGATTCGTCTCGCGAATTAGTCCAAGGTTATGGAATAAGTTTTCTCAGTAGTCTATATTTAATACTTCTAATTA
GTGTCCAAATATCCAATGTGTCTGGGACTAAAATTTAGTCCCTGAATCCAAACAGGCCCTGAGGCTAGGCTCTAGCCTCAGTGTGTTTTCGAAAAAAAAG
AAGAAGAGGAAGGAGTAGAGAGTGTTAACTCCACACACATTCCAAGGTATGTCTAGTTGTATCAGGTTAGCTCCTATTTAACTATTGGCGG