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Detailed information on CNT30554719


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004724, E-value = 1e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694877Oryza glaberrimaOryza sativa19.7733.4686.13274reverse complement
CNT30521524Oryza glaberrimaSetaria italica13.6452.9483.6189forward
CNT30106215Oryza glaberrimaOryza longistaminata12.4129.7691.28172reverse complement
CNT30103030Oryza glaberrimaOryza rufipogon21.578.0787.29299reverse complement
CNT30577325Oryza glaberrimaOryza barthii83.2682.9699.911154forward
CNT30116366Oryza glaberrimaOryza nivara13.4257.5989.78186reverse complement

Expression of CNT30554719

Peptides detected in this lncRNA

>peptide 1 (36 aa)
VKACTIDNFSQLYCVHDSAGKTGDLEKEGVEEKMGM*

>peptide 2 (87 aa)
MDSSDWLPWIYPRRPHIEVMRISIAGGRAGYHRHLRQVIHEDACLLCHRKRVFKGWLSFICFVKEASTSNYRGPLRVCFLVFFHSCY*

>peptide 3 (32 aa)
MDLSSTSSYRSDEDIHCRRSRRLSSSSPASYS*

Sequence

>CNT30554719
TGTAAAAGCATGTACAATAGACAACTTTAGCCAGCTATATTGCGTCCATGACTCTGCTGGAAAAACTGGTGATCTAGAAAAGGAAGGAGTGGAAGAAAAG
ATGGGCATGTGAAAAAAGGTAGATCTCTCTCTCTCTCTCTCTCAGTGAGAACTCTCCAGGAGAAAAAAAGAGAGTGCTTCTTCCTCGTTCCGTCCGGCCC
CTTTCCCCATCAATTCAGACGACATTCACTCGTCGGTGATAGGAAAGAGGGTTTAGGTAGTCAGGTTCTTCCCGTAGTAGGGTCTTTCCCCTTCTTCTTT
TTTTTGGTTATTTTGGGTCTGTTGTACAGCACAAGAGGCTGTCTCTGTTGCAATTTCTCTTGTCTTGATGCTGCTACATGGATTCAAGTGACTGGCTTCC
ATGGATTTATCCTCGACGTCCTCATATAGAAGTGATGAGGATATCCATTGCAGGAGGTCGCGCCGGCTATCATCGTCATCTCCGGCAAGTTATTCATGAG
GATGCATGCCTTCTTTGTCACCGAAAACGGGTCTTCAAGGGGTGGCTGAGTTTTATTTGTTTTGTTAAGGAAGCCTCAACCTCCAACTACAGAGGCCCCT
TGCGGGTATGCTTCCTGGTGTTCTTCCATAGCTGTTATTGATCTTCTTGCTCCTGTTGTCGTCACAAAAGATTTGGCCTTCATCTTGGTGGAAGAACGAA
GGACTTGATTGCTTTTTTTGTCTTTAGAAGGCCTTCTTTGCAAATTTCAGATATGTATCTCTTTTTGCCCATCTGTTAGGGGACTCTCTGCAAAACTGCA
TGTACTTGCAGTTGTCTATCAATATATCCTAAGGTGGTGAGACTAAACTTTATTCCCTGTTACATCGATGTTTGGACATCAATTTGGAGTATTAAATATA
GATTATTTATAAAACTAATTGCATAAATGAGAGCTAATTCGCAAGATAATTTTTTTAAGCCTAATTAATCCATAACTAGCACATGTTTACTGTAGCATCA
CATAGGCTAATCATGTATTAATTAGGCTCAATAGATTCGTCTCGCGAATTAGTCCAAGGTTATGGAATAAGTTTTCTCAGTAGTCTATATTTAATACTTC
TAATTAGTGTCCAAATATCCAATGTGTCTGGGACTAAAATTTAGTCCCTGAATCCAAACAGGCCCTGAGGCTAGGCTCTAGCCTCAGTGTGTTTTCGAAA
AAAAAGAAGAAGAGGAAGGAGTAGAGAGTGTTAACTCCACACACATTCCAAGGTATGTCTAGTTGTATCAGGTTAGCTCCTATTTAACTATTGGCGGATG
ATCTCTTCTCGAAAGAGTAAAAGGATAAACACAAATATGAAAAATATTTAAAAAATTAAGAAAAAACCATAGCAATTTGTTTTGAG