Detailed information on CNT30521524


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554719Setaria italicaOryza glaberrima59.6615.3783.1213forward
CNT30371309Setaria italicaOryza glumipatula49.0218.6484.57175forward
CNT30105552Setaria italicaOryza longistaminata31.096.9988.29111reverse complement
CNT30100437Setaria italicaOryza rufipogon53.787.7183.33192reverse complement
CNT30577325Setaria italicaOryza barthii59.6615.3183.1213forward

Expression of CNT30521524

Peptides detected in this lncRNA

>peptide 1 (39 aa)
LGGVWEERLKFSPVTSDVRILIRRTKHKLITKLTAEPLG*

>peptide 2 (44 aa)
MNLLSLINPSLANGYCSTTLSNHGLIRLNRFVSRFSLGVVQLVL*

Sequence

>CNT30521524
TTAGGGGGTGTTTGGGAGGAGAGGCTAAAATTTAGCCCTGTCACATCGGATGTTCGGATACTAATTAGGAGGACTAAACATAAGCTAATTACAAAACTAA
CTGCAGAACCCCTAGGCTAAATCGCAAGATGAATCTATTAAGCCTAATTAATCCATCATTAGCGAATGGTTACTGTAGCACCACATTGTCAAATCATGGA
CTAATTAGGCTTAATAGATTCGTCTCGCGATTTAGCCTAGGGGTTGTGCAATTAGTTTTGTAATTAGTCTATGTTTAATACTCCTAATTAGTGTCTAAAC
ATCCGATGTGACAGGGGCTAAAATTTAGCCCATGCCTCCCAAACACCCCCTTAGTCA