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Detailed information on CNT30564008


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30629544Actinidia chinensisVigna unguiculata69.3869.8484.47528forward
CNT30426787Actinidia chinensisPapaver somniferum62.6843.2885.53477forward
CNT3052982Actinidia chinensisAmborella trichopoda71.3541.5181.4543forward
CNT30724009Actinidia chinensisLupinus angustifolius71.2249.9183.39542forward

Expression of CNT30564008

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MSLTANRPRGGYSEKVSTTMGLVGIILMSPASPFFKNLGSFSSSLPDRRSILVKSSANLTAM*

>peptide 2 (44 aa)
RQGKIAVATVGLAPNSRSNKQAMKTTNYSRTRNELLDQLNNRGP*

Sequence

>CNT30564008
AAGGCAAGGAAAGATAGCTGTCGCCACCGTCGGTCTAGCACCCAATTCCAGGAGCAATAAGCAGGCAATGAAGACAACAAACTATAGCAGGACAAGAAAT
GAACTACTAGACCAACTAAATAACCGAGGACCATAAAACTGGAATAAGCAAGGTGTTTTTTATGACTGTAATAAATACGATTTGAAGCATCTTCAATTGA
AACTCGGAACTCCAATAGTCACTTCTTCTTAGCAGCAGATTTGGTGACTTTGGCACCAGATGGGTCCTTCTTCTCCACGCTCTTGATAACACCAACAGCA
ACAGTCTGACGCATGTCCCTGACAGCAAATCGTCCAAGAGGTGGGTACTCGGAGAAAGTCTCCACAACCATGGGCTTGGTTGGAATCATCTTGATGAGCC
CAGCATCACCGTTCTTCAAAAACTTGGGCTCCTTCTCGAGCTCCTTGCCAGATCGGCGGTCAATCTTGGTCAAGAGCTCAGCAAACCTGACCGCAATGTG
AAATTTGCAGCCTCCTTGGCCGGATCATCCTTTGAGTTGGATGCAACGAAGCCACGCTTGAGATCCTTTACTGCAACGTTCTTCACGTTGAACCCAACAT
TGTCACCAGGCAGGGCTTCTAGCAGAGCTTCGTGGTGCATCTCCACAGACTTAACTTCAGTGGTGAGCCCAGTTGGTCCAAAAGTGACAACCATACCGGG
CTTGATGACACCGGTCTCAACCCTGCCTACTGGGACAGTACCAATGCCACCAATCTTGTAG