Detailed information on CNT3079853


BLAST search results

BLAST vs Swiss-Prot:
sp|P43297|RD21A_ARATH, E-value = 8e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30563550Brassica junceaActinidia chinensis25.267.7891.7873forward
CNT30412746Brassica junceaPapaver somniferum27.6811.8587.580forward

Expression of CNT3079853

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MEVKTQCYAPSLCIRSLPSLIPMSFSQSNSLCRSQFRIRPPKLRGLDLFHNIH

>peptide 2 (39 aa)
WLLLVGNIPKQGNTCHNQRDNNKCCSQDMCSNCHIGLEA*

Sequence

>CNT3079853
CGTGGCTGCTTCTAGTGGGCAACATCCCCAAGCAAGGCAATACTTGCCATAATCAAAGAGACAACAACAAGTGTTGCTCTCAGGACATGTGTAGTAACTG
TCACATTGGGTTGGAGGCGTAACGGGAGATGGAGGTGAAGACGCAATGTTACGCTCCATCCTTATGTATCCGCTCTCTCCCCAGCTTGATCCCCATGAGT
TTTTCACAATCCAATAGTCTTTGCCGTTCTCAGTTCCGTATCCGACCGCCAAAACTCCGTGGTCTAGATCTGTTCCACAATATCCATCG