Detailed information on CNT30550000


BLAST search results

BLAST vs Swiss-Prot:
sp|P38415|LOXA_SOLLC, E-value = 2e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071772Ipomoea trilobaQuercus suber40.395.7587.38103forward
CNT30201872Ipomoea trilobaPisum sativum21.5716.5289.0955forward
CNT30710995Ipomoea trilobaGlycine max20.3921.0594.2352forward
CNT3042803Ipomoea trilobaPrunus dulcis69.812.7679.78178forward
CNT3095860Ipomoea trilobaSolanum tuberosum70.5917.3483.89180forward
CNT30564842Ipomoea trilobaActinidia chinensis74.919.7380.1191forward
CNT30599437Ipomoea trilobaFraxinus excelsior55.2931.9780.85141forward
CNT30326237Ipomoea trilobaAsparagus officinalis33.733.8783.7286forward

Expression of CNT30550000

Peptides detected in this lncRNA

>peptide 1 (37 aa)
DQLGVLDQGKPSPCRLQQTFPLHICQETLFSQELHQH*

>peptide 2 (84 aa)
KISWECLIRENPVLVDYSRHFHCISVRKHCFLKNSTSINQDLSSQGIDSHCVTEMGMQKLIYWVKRASKCHLCSTKAGFLRHISC

Sequence

>CNT30550000
AAGATCAGTTGGGAGTGCTTGATCAGGGAAAACCCAGTCCTTGTAGACTACAGCAGACATTTCCATTGCATATCTGTCAGGAAACACTGTTTTCTCAAGA
ACTCCACCAGCATTAATCAAGATCTGTCTAGCCAAGGCATTGATAGTCATTGTGTCACGGAAATGGGGATGCAGAAGCTTATATATTGGGTGAAGCGCGC
TTCAAAGTGCCATCTGTGTTCAACAAAAGCAGGGTTCTTGAGGCATATATCTTGT