Detailed information on CNT3050527


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670545Cucumis sativusSetaria viridis17.5326.6586.67105reverse complement
CNT3054162Cucumis sativusAmborella trichopoda9.6826.6191.3858forward
CNT30724464Cucumis sativusLupinus angustifolius36.5652.1488.13219forward

Expression of CNT3050527

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MFLVDAGPGTPIICMQDEPTGVPINRVARFETHSAVGSLDLVAGESLLK

>peptide 2 (53 aa)
LINNRKRCQVRLITESPTSIWIVLLPSIWMVLRINHLDLSLALRTLDLCLMEY*

>peptide 3 (71 aa)
MDSPTSFHMDGPTDKSPGPFFGTPNPRPLFDGILTKNIASKRQRFIAHVAALRTPIKKKKEREAQRILLEY*

>peptide 4 (36 aa)
MQDLGPPSFVCKMSLQEFQSIESPGLRPTLRWDPWI*

Sequence

>CNT3050527
CTGATCAATAATAGGAAGAGGTGCCAGGTTCGGTTAATTACTGAAAGTCCTACTTCCATATGGATAGTCCTACTTCCTTCCATATGGATGGTCCTACGGA
TAAATCACCTGGACCTTTCTTTGGCACTCCGAACCCTAGACCTTTGTTTGATGGAATATTGACAAAGAATATTGCGTCGAAGAGGCAAAGATTTATAGCC
CACGTAGCGGCCCTCCGGACTCCCATAAAGAAGAAGAAGGAGCGGGAGGCGCAAAGAATATTGCTCGAATATTGAGGCGCAAAGAATTTGCGAAGAAGGA
CTATCCATCAGGGAGGAGGAAGGAGGAAAAAAAACTTATCTTGACTCCCATCTATTTAGATTTTCTGATATTATTTCCAAGATCTAATTCGAGTTTTTTC
TTACATAGTGTAAACGCCTTACAATCTTCAGTTTTACGCTTCAGGGAAGAAATGTTCTTGGTGGATGCAGGACCTGGGACCCCCATCATTTGTATGCAAG
ATGAGCCTACAGGAGTTCCAATCAATCGAGTCGCCAGGTTTGAGACCCACTCTGCGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTTCTCAAAG