Detailed information on CNT30502310


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670887Nicotiana attenuataSetaria viridis7.8232.992.1176reverse complement
CNT30398960Nicotiana attenuataTriticum turgidum13.4836.3987.79131forward
CNT3054162Nicotiana attenuataAmborella trichopoda7.131.6586.9669forward

Expression of CNT30502310

Peptides detected in this lncRNA

>peptide 1 (35 aa)
SKSQGQSQLLCFLTLFSSSHPIRESRATKVALSEE*

>peptide 2 (34 aa)
MLFRKTTFQITTPKSYLRFRSNTTLPTGQFFKIL*

>peptide 3 (52 aa)
MLAPNGRETTFLSDVANTQTRCYSRYHFGCRMGMKVEEAGKKRLFAIGLPLY*

>peptide 4 (46 aa)
MLQPLSLWLQDGNEGRGGREEKVIRYWLTLILGLFFFISLSFVLVF*

>peptide 5 (29 aa)
MEERRLSFRMLQTHKRDATAAITLAAGWE*

>peptide 6 (87 aa)
QIPRPEPIIVLLNPVFVKSPYKRKPRNQSSPFGGVKHQAEWISSSGAGYSFQARQAAARFNDLVGSTDVVAGEPLFLLPRRFRQNRA*

Sequence

>CNT30502310
AGCAAATCCCAAGGCCAGAGCCAATTATTGTGCTTCTTAACCCTGTTTTCGTCAAGTCACCCTATAAGAGAAAGCCGCGCAACCAAAGTAGCCCTTTCGG
AGGAGTAAAACATCAAGCAGAATGGATATCGAGTTCGGGGGCTGGTTATAGCTTTCAAGCGAGACAAGCAGCCGCCAGGTTTAATGATTTGGTGGGATCT
ACAGATGTAGTGGCTGGTGAACCGCTTTTTCTTCTTCCACGAAGATTCAGACAAAACCGAGCTTGAATGGAACTGAACAAGATTTGGCGAACGAATACAA
AGGTCTTATAGCGGTACGATTACGATGCTTGCTCCGAATGGAAGAGAGACGACTTTCCTTTCGGATGTTGCAAACACACAAACGAGATGCTACAGCCGCT
ATCACTTTGGCTGCAGGATGGGAATGAAGGTCGAGGAGGCAGGGAAGAAAAGGTTATTCGCTATTGGCTTACCCTTATATTAGGCCTATTTTTCTTCATT
TCTTTGTCTTTTGTTCTTGTCTTCTAATTTTTTAAAAATAGATAAAGAGTTTCTTACAGATTATCGAAAGATTCGTTCGAATCCGACCCAACATGAATTT
TTAGCTACAATGGTTTTTCGGGAGATATAGAGCAAGATTCTGTACTGACCGTCAAGCCGTGATAATTCATGATTCCCAATCCTTAGTTAGCCGACGCCTC
TCTCTTCTCCTTTCTTTACAGAAGCGGATTCGAAAGCGCAAACAAAGCAGCAAGAAGAAAAGCCTAAAGGCACAATCAAGGGAAGGCTCGGACAGCTGCC
AAAGCCTATGCTTTTCCGTAAGACAACCTTCCAAATCACAACTCCTAAATCCTACCTACGCTTCAGATCTAATACTACTTTGCCAACTGGCCAATTTTTT
AAAATCCTATAGTAAAAGTGAAATTACAATGGATTACAAAAATATAGTACTAGTTCTTTCGGACGAAACGGC