Detailed information on CNT30523822


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30472158Setaria italicaSaccharum spontaneum26.095.519090forward
CNT30576920Setaria italicaOryza barthii38.843.1589.55134forward
CNT30497423Setaria italicaDigitaria exilis25.228.5186.2187forward
CNT30558913Setaria italicaPanicum hallii43.485.6888.67150reverse complement

Expression of CNT30523822

Peptides detected in this lncRNA

>peptide 1 (48 aa)
GLFGYEVLNFNSVTSDVRMLIRRTKHELIIKLIAKPCANSRDESIKPN*

Sequence

>CNT30523822
GGGCTGTTTGGATACGAGGTGCTAAACTTTAACAGTGTCACATCGGATGTTCGGATGCTAATTAGGAGGACTAAACATGAGCTAATTATAAAACTAATTG
CAAAACCTTGTGCTAATTCGCGAGACGAATCTATTAAGCCTAATTAATCCATCATTAGCAAATGGTTACTGTAGCACCACATTGTCAAATCATGGACTAA
TTAGGCTTAATAGATTCGTCTCATGAATTATACTCCATCTGTGCAATTAGTTTTGTAATTAGCTTATGTTTAGTACTCCTAATTAGCATCCAAACATCCG
ATGTGACAGGTGTTAAACTTTAACAGGTGTTTCCCAAACACCCCC