Detailed information on CNT30472158


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694625Saccharum spontaneumOryza sativa6.3727.5188.46104forward
CNT30523822Saccharum spontaneumSetaria italica5.5126.099090forward
CNT30103881Saccharum spontaneumOryza rufipogon6.5522.5783.18107forward
CNT30116366Saccharum spontaneumOryza nivara6.8634.6782.14112reverse complement

Expression of CNT30472158

Peptides detected in this lncRNA

>peptide 1 (37 aa)
AHSQPPLSASHPWLSSVLHAAATPLPESAIMDEESHL*

>peptide 2 (32 aa)
RTLSASSLCLSSMALLCSSRCSNPAARIRYHG*

>peptide 3 (64 aa)
MLLSPLPWCYPCHFLLHSGLLVSSILGSSSAARHGNKHRLVVTHGWSPSRLIPQIKASRSLAAI*

>peptide 4 (68 aa)
HTLSLLSLPLIHGSPLFFTLQQPRCPNPLSWMKNLTYNHLHATLSITMVLSLPFPPPFRTPCILYFGI*

>peptide 5 (35 aa)
MATPHVHKLLPSGEIVVTVICTGLPVYSLCPGLSVV

>peptide 6 (54 aa)
MFLLLDVVDPHLATSLDFLHGQLPLSQPMSVSLIAQVTMVCWCERLMNFSDLVV*

>peptide 7 (38 aa)
MCAGQGGGGLLHCGGMVPCWPAVMPRQGQEDPCVQQNN*

Sequence

>CNT30472158
CGCACACTCTCAGCCTCCTCTCTCTGCCTCTCATCCATGGCTCTCCTCTGTTCTTCACGCTGCAGCAACCCCGCTGCCCGAATCCGCTATCATGGATGAA
GAATCTCACCTATAATCACCTCCATGCTACTCTCTCCATTACCATGGTGTTATCCCTGCCATTTCCTCCTCCATTCCGGACTCCTTGTATCCTCTATTTT
GGGATCTAGCTCTGCTGCTCGCCATGGGAACAAGCATCGCCTGGTCGTGACCCATGGCTGGAGCCCTTCACGGTTAATACCCCAAATCAAGGCCTCACGA
TCTCTAGCTGCTATCTAGTTATTTCCCCCTTCGATTTTCCCCCTCTCTGATGTGTGCAGGTCAGGGTGGCGGCGGCCTGCTTCACTGTGGTGGCATGGTG
CCGTGCTGGCCGGCCGTGATGCCAAGACAGGGCCAAGAAGACCCGTGCGTGCAGCAAAACAACTGACAGTGAGTGCTCCTACTCTTGCATCTTCATAGTC
AGTTCATCTAGTCTTCACCTCAAGCTACAGCTTAGTGTCTCTACAAGTGGAAGTTTCTTTTAGTAACGTTTTATTAGTCCAGGTTCAAGTAGAGCACCTG
CCATGGAGATGAATATCTTGACTGTACAAGTAGAGCATTAGTTCTTCTAATAACAACTAGCACACATTTGTCCTTGTCCAAAACATATTACCTAGTATTT
GTTAGCTGTGCTCTACTTGTACAGTCAAGATATTCTTCGCCATGGCACTATGGCAGGTGTTTCGTGCTCTTAGTGGAGGAAAGAAAAAGTTTCTCTAACC
TGTGCATTTAGATCCGCACCTTTAATCCTGGTGAAGTTTAGCTCCAGGCTCAAGACTTGCGCTCCCTCAACAAGCACTCCTGTAATGTTTCTTCTTCTCG
ACGTGGTTGATCCTCACCTAGCTACTTCTCTTGACTTCCTCCATGGTCAGCTCCCTCTCTCTCAACCTATGTCGGTCTCCCTGATTGCTCAGGTCACCAT
GGTGTGCTGGTGTGAACGGTTGATGAATTTCTCAGACTTGGTTGTTTAGTTTCTGTGTAAAAATTTTGGGGTGTCATATCGTATGATTTCTAGGATGTCT
GAAGGAGTGTTCGGATATTAATAAAAAACTAATTACATAACTCGCGAGACGAATTTAGTAAACCTAATTAATCCGTCATTAGCACATGTTTACTGTAGCA
CGACATTGTTAAATCATGGATTAATTAGGCTCAAAAAATTTGTCTCGCAAATTTATCGCGATATGTGTAATTAGTTATTTTTTCGTCTACATTTAATACT
TCATGTAAACATCCGATGTGACGGTGTGAAAATTTTCTAGGAGGAGCTAAACACTGGAGAGAGTGAGGGCTGGTTTACTACTGTCACTCCTTTTCACTTG
TACTGAGTGCTTATACTACTACTCTCCTCTATTCCTGCATGTGGATTTTTAGACTGGTCAAGACTTAAACAGTATGATTGCCTAGTTGTTGCCACTGGAT
TGGCTGGCCTCCTTCTAGAAGGGCATGGCTACACCTCATGTGCATAAACTATTACCAAGTGGTGAAATTGTAGTCACAGTGATATGTACTGGTCTACCGG
TATACTCCCTCTGTCCCGGTTTATCAGTCGTTT