Detailed information on CNT30558913


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675102Panicum halliiSetaria viridis4.0142.5790.57106forward
CNT30523822Panicum halliiSetaria italica5.6843.4888.67150reverse complement
CNT30116366Panicum halliiOryza nivara4.2434.6786.61112forward

Expression of CNT30558913

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MKGLEGICQALKCLANFIAMVSVMGILVHTCSCFNPCRSRFS*

>peptide 2 (32 aa)
MQFMASILLKSTSISTASKSLDILTEDKWLAG*

>peptide 3 (34 aa)
MYQKSRLCSRAWFAYSEKCTFPEDKGTQLLFARA*

>peptide 4 (49 aa)
MIQLTVTREEEMSVLSVFASLPSHLFLSIMGLIILILQVALWELVLYID*

>peptide 5 (52 aa)
MVVAKLVVRIVRNMLLQRFFPFGCMTCMLPIDAVYGINSSEVHIHIDSIQVS*

>peptide 6 (52 aa)
MSSTHDPTHGYQRRGDVCAVSVCFFAITSVSFNYGPHYINPSGSIVGIGSIY*

>peptide 7 (42 aa)
MWKQFRLGLVTTGFIISPVTSDVWMLIRSIKHRLMTKKFHNL*

>peptide 8 (32 aa)
MYRDVFIDNLKFPCLNSAFFFTSSDMCFISSF*

Sequence

>CNT30558913
TTTTATGGCGCAGCTCAGTTTGTCTAGAGGTTCCTATCGGTGATATAAAATACCTCTCTAAGCATTAAGGGAAAAAATAATATTTGCTATACTTTACTTA
TATGACCACTCATAAATTCTTACCCTGTTAAGTATTCTAGCTAAATTTAATTGCCATCATTTTATTAATCCTCCACATATTTGAAGGTGACAGTTGCGTG
TAATTTTTCTCAGTGTCACTGTCTACCTTGGCAAACAGGCAACAGAACCTGACAATATTTTGGTTTGAAAGCTCTGCATGTGAAAATGTTGAGTGCTTAT
ATGTTACACATATCATGTACAAAGTGACAAACTGCAGCAAATGAATAGGGGAATAGTTCATCCTAACAGTTCACTCCAGACATGAGCAGCACTCATGATC
CAACTCACGGTTACCAGAGAAGAGGAGATGTCTGTGCTGTCAGTGTTTGCTTCTTTGCCATCACATCTGTTTCTTTCAATTATGGGCCTCATTATATTAA
TCCTTCAGGTAGCATTGTGGGAATTGGTTCTATATATTGATTAGGTTCTTTATTTATGATTTCCTCTTTCAAATGTGGCAAATAGTGAAAGGTAGAAATT
GGAATGGTGTCTAGCTTATATCAATATTTGAATGTATCTGACTTGCATGGGTTTTTAATCAACTAATTTGGTGATTTCTTCTGCATTGTTTGGTTCTGAT
ATATATTATGTACAGAGATGTTTTCATCGACAATCTTAAATTTCCATGTTTGAATTCTGCATTTTTTTTCACCTCTAGTGACATGTGTTTCATTTCATCC
TTTTGAACAATATGGTAATTTACTTGATTATTTATTTCATTCCGTAGCAATGCATATCTTCACAGAAGTGCTACTCAGTAAGTATAAAAGAGTATAATTT
ATGCTTGCTGGTACAAGTGTTCCGTTGTTCGCTTATCTGTATTTTTGTTGGGCATAATTCTGCATTGGTCATGCATGTGGAAAAGCCTCAATGGATCTGG
CAATGCAGTCTAGGGATATCTCAATCCTTCTGCTCTTCTTCTGAATAAACATTGCCAAACCTGTTGGAGGCTATCATGTGGAAACAGTTTAGGCTAGGTT
TGGTTACTACAGGGTTTATTATAAGTCCCGTCACATCGGATGTTTGGATGCTAATTAGGAGTATTAAACATAGATTAATGACAAAAAAATTCCATAACCT
CTAGGCTTTTTTGGGAGACGAATCTATTAAGCCTAATTAGTCCATGATTAGCCCATGTGATGCTACAGTAAATATGTGCTGATTATGGATTAAGTAGGCT
TAATAGATTCGTCTCGCGAATAAGCCCTAGGCTTATGCAGTTAGTTTTATAATTAGCTTATGTTGGTATCGAAATATTCGATGCGACAGGGCTTATTATA
AGCACGTGGAATCCAAACAGCCCCTTAGTATCATAAAGCTACATCACTAAGAGGGCTTCTGGAGCGATATATTTAGTCATTCACCTTTTATGAATTACTC
ATTATATAACACCCAAGTAGCCTAGATTCCAGGCTTCATATTCTCTAAAATTCATTTTGTGTATAGCAGATGCATGTACATTGCATAGATACGCTGATTC
ATCACATGAATAACATCATTATGCATCTGTGAGAATCATCTGTACTTTTTTCTTTGAAATGGAGAATCATCTGTACTTTATGCCTGCCTTTTTACAACCT
GCATGCTAACTAGTGCTAATATATATTAATATCTCAGTAAGAATAAATGTATCAAAAATCAAGATTATGCAGTAGAGCATGGTTTGCCTATTCTGAAAAA
TGTACTTTTCCCGAAGATAAAGGGACTCAATTGCTGTTTGCAAGAGCTTAGGAGTTCTATAGATGTGGTAACTCCTTATACTTGCCTTTGGAAAATTTCA
CCTCTTTATTCTAGCATTTGCGGACAATTAGTTGAGCTGATGTGTCCTGAATTGAATACTAGCATCTGTTAGCTTATTAGAAGTTTACATCTTACTCTGG
ACCGTGGATTCTTCTGTCCAAGTGGGCAGTAAAATTCACTGTTAGTTGGACCAGCTGGCTGATTTGCCCTCGAACTCTGTTCATGGTAGTTGCGAAGCTG
GTTGTGCGAATAGTTCGCAACATGTTGCTGCAAAGATTTTTCCCATTTGGTTGCATGACTTGTATGTTGCCGATTGATGCAGTTTATGGCATCAATTCTT
CTGAAGTCCACATCCATATCGACAGCATCCAAGTCTCTTGACATACTAACAGAAGACAAATGGTTGGCTGGCTGATCGAGTGGTTCCCACTAGAGGACGA
GCTTCTGTCCAATTTTTCACACAATAGGCCACTTCCCGAATGAAGGGACTGGAGGGGATCTGTCAGGCACTCAAGTGCCTTGCGAATTTCATAGCAATGG
TTAGTGTTATGGGCATCCTAGTGCATACCTGCTCCTGTTTTAATCCGTGTCGTTCAAGGTTTTCGTAGCGTTTAGCTGTGCGTAACTTAATCATGACCTG
CTACTGGAGGCTTGATTGTAGCTTGTGTTGTGGGTGAAAAAGCTGGACGTCACAACTTGTAACCAACACGTTCATGACTGTATGTGCATATGTGTTAAAC
GTGTATCTAATAGTCGGAATTTTGTCTCTGGCTCAGCCACC