Detailed information on CNT30497423


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690109Digitaria exilisOryza sativa5.2820.8588.8954forward
CNT30670881Digitaria exilisSetaria viridis8.5141.2387.3687forward
CNT30523822Digitaria exilisSetaria italica8.5125.2286.2187forward
CNT30117119Digitaria exilisOryza nivara5.2823.2888.8954reverse complement

Expression of CNT30497423

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MLVSGYPHQSPGSPRWASAHPRFPEAYSQLPHGSSSCSASIHQFVLSLCSYRQPDRPQQLI*

>peptide 2 (71 aa)
MDRHPAPPRFISLCYRFALIDSQIDPNSLSSLLQASSCKLASALCRMSTGVSTTPASSGMKFKVANPHRCL*

>peptide 3 (81 aa)
MLSLYGCIEIKSYVYIFFHICHGAAMTCCIVRMNSICACLLFVLVYHRYFSMILTWCCPMYFGFVSYIDHIYVLVYHRYFL*

>peptide 4 (35 aa)
FRSPTFANLFCQLVTSNVWTLIRSIKHRYKNKLIT*

>peptide 5 (41 aa)
MYRNQKLCIHFFSHLSWSCNDMLHCEDELHLCMLAFCVGLS*

Sequence

>CNT30497423
GTTTAGATCGCCAACTTTCGCCAACTTATTTTGCCAACTTGTCACATCGAATGTTTGGACACTAATTAGGAGTATTAAACATAGGTATAAAAATAAATTA
ATTACATAGATGGACTCCACATCGTGAGACGAATCTATTAAGCCTAATTAATTCGTCATTAGACACTATCGTGCTACAGTAACCCGTCATTAAAAATGCA
CTAATGACGGCACATATTAGGCTTAATAGATTCGTCTTGCGATGTAGAGTCCATCTGTGTAATTAGTTTTATAATTAGTCTATATTTAGTACTCCTAATT
AGTGTCAAAAGGATGGATGTGACATTTCGCCAACTTTCACCAACTCATCTAAACAGGGCCTAATTCTGAATGTTGGTTAGCGGATATCCACATCAGTCAC
CCGGATCACCCCGTTGGGCATCCGCACATCCCAGATTCCCAGAGGCATATTCCCAACTTCCGCATGGATCGTCATCCTGCTCCGCCTCGATTCATCAGTT
TGTGCTATCGCTTTGCTCTTATAGACAGCCAGATAGACCCCAACAGCTTATCTAGCCTGCTCCAGGCTTCCAGCTGCAAACTTGCATCTGCCCTCTGCCG
CATGTCGACTGGAGTTTCCACCACCCCGGCGTCATCGGGGATGAAGTTCAAGGTGGCAAATCCTCACCGCTGCCTGTGAGGTTACGGATGTGACTATATG
AAGTTCTTGTGATGCGAGATGGCCGGAGATGACATGGTCTTTGATGACATCAATTTGAATTTAGATATATGTTGAGTCTATATGGATGTATAGAAATCAA
AAGCTATGTATACATTTTTTTTCACATTTGTCATGGAGCTGCAATGACATGTTGCATTGTGAGGATGAACTCCATCTGTGCATGCTTGCTTTTTGTGTTG
GTTTATCATAGATACTTTTCTATGATTTTGACCTGGTGTTGCCCTATGTACTTTGGATTTGTTAGTTACATTGATCATATATATGTGTTGGTTTATCATA
GATACTTTCTATGATTTTCGAC