Detailed information on CNT30523236


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 4e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381598Setaria italicaManihot esculenta27.3512.0588.0667forward
CNT30526306Setaria italicaPhaseolus vulgaris35.519.2886.2187forward
CNT30708773Setaria italicaGlycine max76.7329.9483.51188forward
CNT3084615Setaria italicaVigna radiata73.0615.5180.45179forward
CNT30414433Setaria italicaPapaver somniferum37.557.4282.6192forward

Expression of CNT30523236

Peptides detected in this lncRNA

>peptide 1 (31 aa)
ASSFSLASSVGAKLSGLKTLPGYPHSWGGRL*

>peptide 2 (73 aa)
ELLLLGLERGREVERVEDAAGVSALVGRQAVALEDGVLVDAAGVLDVLPPPDLDVVEEDELDDEQRPRPGCGR*

Sequence

>CNT30523236
GCGAGCTCCTTCTCCTTGGCCTCGAGCGTGGGCGCGAAGTTGAGCGGGTTGAAGACGCTGCCGGGGTATCCGCACTCGTGGGGCGGCAGGCTGTAGCTCT
TGAAGATGGGGTCCTGGTTGACGCTGCCGGGGTTCTTGATGTCCTGCCACCGCCGGATCTCGACGTAGTGGAAGAGGATGAACTCGATGACGAACAGCGG
CCGCGACCGGGGTGCGGGCGGTGACGGACGCCATGCTTCGCGGTG