Detailed information on CNT30105552


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004914, E-value = 8e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521524Oryza longistaminataSetaria italica6.9931.0988.29111reverse complement

Expression of CNT30105552

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MGVSSEQREASSRASARWACVGGGVSLTGGPGKSGVPGDATRHRRAAAAAAGSSGVEDLGVARGEAGELGGALDDLPVHPLVVAAVDGRGRGDRAYG

>peptide 2 (60 aa)
MGMGYWDAMPHRPISSKFIFQHLLIDRKKSLIRVAKALFTRVTSNVWTIYEVLNIDKIKN*

>peptide 3 (50 aa)
MKWGLNYFPFLFPHFVHSFSSAVDVIDLHHFFLVCSKPRANICKYTRSGT*

>peptide 4 (49 aa)
MSGQTLQEKLKIPYIMGRREQVLQRRTLHSSVLCSSDKIELRCRDGQRG*

>peptide 5 (40 aa)
MQRWTAGVKRPFSPRFGVTDRWVPCQGSACVISPVDGRQQ*

>peptide 6 (39 aa)
MGWPDGNGILGCDATPPNFIEVYFSAFAYRSQKIPHSCC*

>peptide 7 (38 aa)
MPRQCLCDFARGWASAVSSGKRRHVLLPGGPAWVEGSH*

Sequence

>CNT30105552
ATCTTTTAAATTTAAAATAATAATACTCAATTAATCATACATACAAATAACTCATCTTATTTTACAAGTCTTCTTAATTTTCTCATTTCCTCAGTTCACG
AATTGGTGGTGAGATTGGCCAACTCCGTTGAATCTTCCAGCGGCAAAGGATGGGGATGTGGAATTGGAATTGAGATTTGGATGGGATGGCCGGATGGGAA
TGGGATATTGGGATGCGATGCCACACCGCCCAATTTCATCGAAGTTTATTTTTCAGCATTTGCTTATAGATCGCAAAAAATCCCTCATTCGTGTTGCTAA
GGCCCTGTTTACCCGTGTCACATCGAATGTTTGGACAATATATGAAGTATTAAATATAGATAAAATAAAAAACTAATTATATAGATTGCCTGTAAATTGC
GAGACGAATCTTTTAAGCCTAATTGCTCTATAATTTGATAATGTGGTGCTATAGTAAACATTTGCTAATGATGGATTAATTAGCTTTAATAAATTCATCT
TGCAGTTTACAGGCGAAATATATAATTTATTTTGTTATTAGTCTACGTTTATTCAAATATGTGTTCGTATATCCGACGGCGTAAAACGTAACCACAGCCT
ACATACGACAATTCCGCAGTGGCTGGGAACAAAACATTCTTTCTTCACCATCTTATTGGTAAGTACTTTGCCTTAGTGAACGAAATGAAATGGGGTTTGA
ATTATTTTCCTTTTCTTTTTCCCCACTTTGTTCATTCATTCAGTAGTGCTGTCGACGTCATCGATCTTCACCATTTTTTTCTCGTTTGTTCAAAACCTCG
TGCAAATATTTGCAAATATACACGTAGTGGTACATGAAGAATCTACTACTACTGCTAGGAGTAATTAATTAAATATGGGTGGTATTTACTCCCTCCGTCC
CACAATATTAGAGATTTTGATTCTTTGATTACAACGTTTGACCACTCATCTTATTTAAATTTTTTTTGCAAATATAAAAAACGAAAAGTTATGCTTAAAG
TACTATAGATAATAAAGTAAGCCACAAATAAAATAAATAATAATTTCAAAAAATTTTTAATAAGATGAGTGGTCAAACGTTGCAAGAAAAACTCAAAATA
CCTTATATTATGGGACGGAGGGAGCAAGTTTTACAGAGACGCACGCTCCATTCCTCCGTCCTCTGCTCCTCTGACAAGATAGAATTGAGATGCAGAGATG
GACAGCGGGGGTGAAAAGACCATTTAGCCCCCGATTCGGAGTCACTGACAGGTGGGTCCCATGCCAAGGCAGTGCCTGTGTGATTTCGCCCGTGGATGGG
CGTCAGCAGTGAGCAGCGGGAAGCGTCGTCACGTGCTTCTGCCAGGTGGGCCTGCGTGGGTGGAGGGGTCTCACTGACAGGTGGGCCCGGCAAAAGTGGG
GTCCCCGGCGATGCGACGCGCCACCGACGAGCGGCAGCGGCGGCGGCGGGGAGTTCAGGCGTAGAGGACCTGGGCGTTGCACGGGGCGAGGCCGGCGAAC
TCGGCGGGGCCCTTGACGACCTCCCAGTCCACCCTCTCGTCGTCGCCGCCGTGGATGGACGGGGAAGGGGAGACCGTGCCTATGGCG