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Detailed information on CNT30371309


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001208, E-value = 4e-175

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691216Oryza glumipatulaOryza sativa26.848.0886.11252forward
CNT30670881Oryza glumipatulaSetaria viridis10.3345.9784.5497forward
CNT30521524Oryza glumipatulaSetaria italica18.4248.4684.39173forward
CNT30554388Oryza glumipatulaOryza glaberrima31.9584.2794300forward
CNT30106952Oryza glumipatulaOryza longistaminata30.885.4483.1290forward
CNT30100437Oryza glumipatulaOryza rufipogon28.4310.7393.26267reverse complement
CNT30116366Oryza glumipatulaOryza nivara20.1358.5185.19189reverse complement

Expression of CNT30371309

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MTVTETDCFDDRIHIPQPTTNQVNSKQHATICWQSEQRDSRSRRICLXGHRMFGR*

Sequence

>CNT30371309
CTACTTTTGATAGCCATATTTTATCTTGGTACACAGACCAATGATAATTAATTTTACTTATCATCCATTTAAACACGCTACTAGTCATTCCTCGTAAACA
AGCAATTCATTAATATTTATATTTACATTTCACGATGCTCAAGTAGCCAATCTTGTGTGGAAAAATAGAGAGTCATACATTAAATCCGAGAAAGTTGTTG
AATTGAAATATGCTTATCAAAAATAGAATTTTCAGATTTGGAAATATGACTATCAAAAGTAGATGGAGGGAGTACTGCTCTTAGCACATGACATAAAAAT
ACTACTACTACTATTCACTGAAACAGTGTAGCACAGGGATTGACATGCAAAGATTCCTATAGCCAAAACTTTTCCAAACTACTGCTATTATTCACCGAAA
CCGACTGCTATGACTGTCACCGAAACCGACTGCTTTGACGATCGGATTCACATCCCACAGCCAACAACAAATCAAGTCAATAGCAAACAACATGCAACCA
TTTGCTGGCAATCAGAACAGCGAGATAGCAGAAGTCGCCGGATTTGCTTAGNAGGCCATCGGATGTTTGGACGCTAATTTAGAGTATTAAACATAGACTA
ATAAAAAAACTAATTTTATAAATGAGAGCTAATCCGCGAGACGATTTTTTTAAGCCTAATTAATCCATAATTATCAAAAGTTTACTGTAGCATCACATTG
TCAAAATCATGACGTAATTAGACTCAAAAGATTCGTCTCGCGAATTAGTCCAAGCTTATGGAATAGGTTTTGTAATTAGTGTATGTTTAATACTCCATAT
TAGTGTCCAAACATCCGATGTGATTTAGACTTGTAATAAGTCCCTGGAAACCAAACCAAACAGCCCCTTAACAGCTCCAAGTCACCGGATTTGCCTTCTA
CAGTTTGTTTTCTTCCACTGGCAACCTTTATTTTTTTTT