Detailed information on CNT30671718


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520701Setaria viridisSetaria italica77.0162.9698.55345forward

Expression of CNT30671718

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRGIARSTQIANSNSSFGGEGLIKNTTKVH*

>peptide 2 (42 aa)
MCSLISADLEDGGVAGVGEVGEEEAETSAMAARACGAGASCVA

>peptide 3 (32 aa)
MVAWPGSARWAKRRRRRVPWQRELVARELAVWR

>peptide 4 (47 aa)
MSIAFLHWLQHSTNTRSRGMHRSTQAIESSQSIPSHKKEKVASTINL*

Sequence

>CNT30671718
TTCAGTGAAAAGAACATATAGCATCTAATGAGTATTGCATTTTTACATTGGTTACAACATAGTACAAATACACGATCAAGAGGCATGCATCGCTCCACAC
AAGCCATTGAATCATCACAGTCTATTCCGTCCCACAAAAAGGAAAAAGTCGCATCGACCATCAACCTATAACAATCTCCACCTCATGCATGCGTGGTATA
GCACGCAGCACTCAGATCGCTAACTCCAACTCCTCATTTGGGGGTGAAGGCCTGATCAAGAACACAACAAAAGTTCACTAATCAGTAACCAAACCGTATA
GATCGAAGCTGTGAGGTATGTGCAGTTTGATCTCAGCTGACCTGGAAGATGGTGGCGTGGCCGGGGTCGGCGAGGTGGGCGAAGAGGAGGCGGAGACGAG
TGCCATGGCAGCGAGAGCTTGTGGCGCGGGAGCTAGCTGTGTGGCGTG