Detailed information on CNT30513945


BLAST search results

BLAST vs Swiss-Prot:
sp|P92980|APR3_ARATH, E-value = 1e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639347Juglans regiaNymphaea colorata24.19.6181.34134forward
CNT30273403Juglans regiaChenopodium quinoa29.58.5883.54164forward
CNT3019826Juglans regiaCitrullus lanatus39.7580.3679.64221forward
CNT3044335Juglans regiaPrunus dulcis40.8359.1189.43227forward

Expression of CNT30513945

Peptides detected in this lncRNA

>peptide 1 (43 aa)
RFSNLAKFSIPFLLKLTRFWPLKMSGTVAVPFASAAPFSIPFS*

>peptide 2 (38 aa)
MPALQQRQETCIQCGCHNASPLGQRIGKFLGLASQCPG*

>peptide 3 (42 aa)
PFLQSCQILYSISAQVNQILAVENVRNRGSSICIGCSIFNTI*

Sequence

>CNT30513945
TCCGTTTCTCCAATCTTGCCAAATTCTCTATTCCATTTCTGCTCAAGTTAACCAGATTCTGGCCGTTGAAAATGTCAGGAACCGTGGCAGTTCCATTTGC
ATCGGCTGCTCCATTTTCAATACCATTTAGTTGAGCTGTGTTTTCTTCCTTGATATTTCCTTTGTGGAGAAAGTTCCATATGTCTTGACCCTGAACGTTT
GCCACTGGATTCCACTTTACCAAGCTACCAGTCCCGCCATCCATCCCCTCAAACACTGGGTCCACTTGGACAATTGGAATCTCAGACCTAGTACCTGGAG
ATTGATCTTTTCGTTGGCCTGTGATCCAGGCACGAAGCCCCTTGAGGGCCCTCCTCAGGGGCCTTACCTTCCTCACGCGGCAACACTCCTGGTGCCCATC
CTCATAAAAAGAAAACAAACCCTTGTTCCTTACTAATGCCTGCACTTCAACAGCGTCAGGAAACATGTATTCAATGCGGATGCCATAATGCTTCTCCACT
TGGTCAAAGAATTGGTAAGTTTCTGGGTTTAGCCTCCCAGTGTCCAGGCTGAAGAC