Detailed information on CNT3044335


BLAST search results

BLAST vs Swiss-Prot:
sp|P92980|APR3_ARATH, E-value = 3e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513945Prunus dulcisJuglans regia59.1140.8389.43227forward
CNT30273403Prunus dulcisChenopodium quinoa45.839.2185.23176forward
CNT3019826Prunus dulcisCitrullus lanatus32.5545.4584.8125forward
CNT30218205Prunus dulcisKalanchoe fedtschenkoi40.6221.3182.05156forward

Expression of CNT3044335

Peptides detected in this lncRNA

>peptide 1 (67 aa)
FHVALVGLTLCMAHNQLRCTPSSAVNSRAHSWHEGSPICHDLQHLLLGSTSPGSTWTTGISDLVPGD*

>peptide 2 (78 aa)
LSCCPGRTDLVHGSQPIEMYPFECSEFTGTFMARRKSHMSRPSTFATGFHFTRVDLDNRNFRPSTWRLIFPLAGDPGT*

Sequence

>CNT3044335
CTTTCATGTTGCCCTGGTAGGACTGACCTTGTGCATGGCTCACAACCAATTGAGATGTACCCCTTCGAGTGCAGTGAATTCACGGGCACATTCATGGCAC
GAAGGAAGTCCCATATGTCACGACCTTCAACATTTGCTACTGGGTTCCACTTCACCAGGGTCGACCTGGACAACCGGAATTTCAGACCTAGTACCTGGAG
ATTGATCTTTCCTTTGGCCGGTGATCCAGGCACGTAGCCCCTTAAGGGCCCTCCTCAGAGGTCTCACCTTCCTCACGCGGCAGCACTCCTGGTGCCCATC
CTCGTAGAAAGAGAACAGCCCTTTGCTCCTTACTAATGCCTGAACTTCAACAGCATCTGGAAACATGTATTCAATGCGGATGCC