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Detailed information on CNT30639347


BLAST search results

BLAST vs Swiss-Prot:
sp|P92979|APR1_ARATH, E-value = 4e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520553Nymphaea colorataSetaria italica5.0220.8391.4370forward
CNT30513945Nymphaea colorataJuglans regia9.6124.181.34134forward

Expression of CNT30639347

Peptides detected in this lncRNA

>peptide 1 (38 aa)
APWSIKDNQPWLPPVLHLHQILNSNTAEAHHALAVENV*

>peptide 2 (55 aa)
MVGTEGPYHDDPTTAPNQLILKWFLRLQGTQLGPGEASRTKKNPFMERLVPSLLD*

>peptide 3 (94 aa)
MGQQNHSWRRSHFLRPPAGCFPCEGRTPSPLHPPTTSGLLARVDPVTQALCKEFTGTFMARRKFHISTPLTLATGFHLIRLPAPPSNPSKEGST*

Sequence

>CNT30639347
GGCACCATGGAGCATAAAGGACAACCAGCCATGGCTCCCTCCGGTTCTCCACCTTCATCAGATTCTCAATTCCAACACGGCTGAGGCTCACCACGCTCTT
GCTGTTGAAAATGTCTGATGGGGCAGCAGAACCATTCGTGGCGGCGCTCCCATTTCCTTCGACCTCCTGCTGGATGTTTCCCTTGTGAAGGCCGCACTCC
TTCGCCTTTGCATCCTCCCACCACCAGCGGCCTTCTCGCTCGTGTTGACCCGGTAACACAGGCCTTGTGCAAGGAATTCACTGGCACGTTCATGGCCCGG
AGAAAATTCCACATATCAACACCATTAACATTAGCCACAGGATTCCACTTGATCAGGCTGCCAGCACCACCATCCAACCCTTCAAAAGAAGGGTCGACTT
GAACCACAGGAATGTGAGCCCTGGTGCCCGGTGACTGATCTTTGCGCTGTCCGGTGATCCATGCCCTTAGCCCTTTGAGAGCTCGCCGGAGGGGGCGCAC
CTTTCTCACCCTGCAGCACTCCTGGTGCCCATCTTCATAGAAGGAGAACAAGCCCTTGGTTCGAACCAAAGCTTGAACCTCAACAGAATCAGGGAACATG
TACTCTATGTGGATGCCATAGTGCTTCTCCACCACATCAAAAAACTGATAAGTCTCGGGGTTCAACCTTCCTGTATCTAGACTGAACACCCGGAACGGCC
TGCCGGTGAGCCGTGCGTATTCGATTAGTGCTACATCCTCAGCTCCACTGCACAGCAAAGAAATAAAGACGTGAGATTCTGGCCAAGAATCTAAGTTCAA
GGTTCAAACCGCAGTTACCAGCAAAGCGTAACGCATACGGGAAACGATACACGACCCGGAAGAAAACAAAAGTAACGAACGAATTCAAAGCGGGGAAGCG
AATTTTGATAAAAAGGAAGCGGATTTTCTGATATCAAACAATTCTGAGAGGAAGACAAAAAAGCAACGGTTCGGTCTCGTAGTGAACGTTCGATCTGGGG
GCGAAGGGACTGGGATTCATCCAACGATCAAGTGGAGTCTTTAGAATATTCTGTTATAAAACAGAATCTACCATCATCTTCCATGGTTGGCACAGAAGGA
CCATACCACGATGACCCCACCACCGCACCCAATCAACTGATTCTAAAATGGTTCTTAAGGCTTCAAGGCACGCAACTTGGCCCAGGTGAAGCGAGCCGGA
CGAAAAAAAACCCCTTCATGGAACGACTCGTGCCGAGTCTCCTAGACTAATCCAGTGGTGGATCCCTCTTATCCACCAGCCACAAGTCATTCAAACAAAA
ATAGCTGCACGTATCACCATCTTCGTCACAAATAACGGGTCGTCAACAGCACAAATTGGCAATTAAGAAAACGAACACCTCACAGAAGAATAGGC